Anti-mpl ligand (thromobpoietin) antibodies

ABSTRACT

Isolated mpl ligand, isolated DNA encoding mpl ligand, and recombinant methods of preparing mpl ligand are disclosed. These mpl ligands are shown to influence the replication, differentiation or maturation of blood cells, especially megakaryocyte progenitor cells. Accordingly, these compounds are used for treatment of thrombocytopenia.

CROSS REFERENCES

This application is a divisional of co-pending U.S. application Ser. No.08/196,689 filed 15 Feb. 1994, which application is acontinuation-in-part of U.S. application Ser. No. 08/185,607 filed 21Jan. 1994, abandoned which application is a continuation-in-part of U.S.application Ser. No. 08/176,553 filed 3 Jan. 1994, abandoned whichapplications are incorporated herein by reference and to whichapplications priority is claimed under 35 USC §120.

This invention relates to the isolation and purification or chemicalsynthesis of proteins that influence survival, proliferation,differentiation or maturation of hematopoietic cells, including plateletprogenitor cells. This invention further relates to the cloning andexpression of nucleic acids encoding a protein ligand capable of bindingto and activating mpl, a member of the cytokine receptor superfamily.This invention further relates to the use of these proteins alone or incombination with other cytokines to treat immune or hematopoieticdisorders including thrombocytopenia.

BACKGROUND OF THE INVENTION

I. The Hematopoietic System

The mammalian hematopoietic system produces a large number of maturehighly specialized blood cells. These mature cells include: erythrocytesspecialized to transport oxygen and carbon dioxide, T and B lymphocytesresponsible for cell- and antibody-mediated immune responses, plateletsor thrombocytes specialized to form blood clots, and granulocytes andmacrophages specialized as scavengers and as accessory cells to combatinfection. Granulocytes are further subdivided into; neutrophils,eosinophils, basophils and mast cells, specialized cell types havingdiscrete functions. Remarkably, these specialized mature blood cells areall derived from a single common primitive cell type, referred to as thepluripotential (totipotent) stem cells, found primarily in bone marrow(Dexter et al., Ann. Rev. Cell Biol., 3:423-441 [1987]).

Large numbers of mature blood cells are produced continuously throughoutlife, the vast majority of which are destined to remain functionallyactive for only a few hours to weeks (Cronkite et al., Blood Cells,2:263-284 [1976]). Thus, continuous renewal of mature blood cells, theprimitive stem cells themselves, as well as any intermediate orlineage-committed progenitor cell lines is necessary to maintain thenormal steady state blood cell needs of the mammal.

At the heart of the hematopoietic system is the pluripotent stemcell(s). These are relatively few in number and undergo self-renewal byproliferation to produce daughter stem cells or are transformed, in aseries of differentiation steps, into increasingly maturelineage-restricted progenitor cells.

For example, certain multipotent progenitor cells, referred to asCFC-Mix, derived from stem cells undergo proliferation (self-renewal)and development to produce colonies containing all the different myeloidcells: erythrocytes, neutrophils, megakaryocytes (predecessors ofplatelets), macrophages, basophils, eosinophils, and mast cells. Otherprogenitor cells of the lymphoid lineage undergo proliferation anddevelopment into T-cells and B-cells.

Additionally, between the CFC-Mix progenitor cells and myeloid cells lieanother rank of progenitor cells of intermediate commitment to theirprogeny. These lineage-restricted progenitor cells are classified on thebasis of the progeny they produce. Thus, the known immediatepredecessors of the myeloid cells are: erythroid colony-forming units(CFU-E) for erythrocytes, granulocyte/macrophage colony-forming cells(GM-CFC) for neutrophils and macrophages, megakaryocyte colony-formingcells (Meg-CFC) for megakaryocytes, eosinophil colony-forming cells(Eos-CFC) for eosinophils, and basophil colony-forming cells (Bas-CFC)for mast cells. Other intermediate predecessor cells between thepluripotent stem cells and mature blood cells are known (see below) orwill likely be discovered having varying degrees of lineage-restrictionand self-renewal capacity.

The underlying principal of the normal hematopoietic cell system appearsto be decreased capacity of self-renewal as multipotency is lost andlineage-restriction and maturity is acquired. Thus, at one end of thehematopoietic cell spectrum lies the pluripotent stem cell possessingthe capacity for self-renewal and differentiation into variouslineage-specific committed progenitor cells. This capacity is the basisof bone marrow transplant therapy where stem cells reconstitute theentire hematopoietic cell system. At the other end of the spectrum liethe highly lineage-restricted progenitors and their progeny which havelost the ability of self-renewal but have acquired mature functionalactivity.

The proliferation and development of stem cells and lineage-restrictedprogenitor cells is carefully controlled by a variety of hematopoieticgrowth factors or cytokines. The role of these growth factors in vivo iscomplex and incompletely understood. Some growth factors, such asinterleukin-3 (IL-3), are capable of stimulating both multipotent stemcells as well as committed progenitor cells of several lineages,including for example, megakaryocytes. Other factors such asgranulocyte/macrophage colony-stimulating factor (GM-CSF) were initiallythought to be restricted in their action to GM-CFC's. Later, however, itwas discovered GM-CSF also influenced the proliferation and developmentof inter alia megakaryocytes. Thus, IL-3 and GM-CSF were found to haveoverlapping biological activities, although with differing potency. Morerecently, both interleukin-6 (IL-6) and interleukin-11 (IL-11) whilehaving no apparent influence on meg-colony formation alone actsynergistically with IL-3 to stimulate maturation of megakaryocytes(Yonemura et al., Exp. Hematol., 20:1011-1016 [1992]).

Thus, hematopoietic growth factors may influence growth anddifferentiation of one or more lineages, may overlap with other growthfactors in affecting a single progenitor cell line, or may actsynergistically with other factors.

It also appears that hematopoietic growth factors can exhibit theireffect at different stages of cell development from the totipotent stemcell through various committed lineage-restricted progenitors to themature blood cell. For example, erythropoietin (EPO) appears to promoteproliferation only of mature erythroid progenitor cells. IL-3 appears toexert its effect earlier influencing primitive stem cells andintermediate lineage-restricted progenitor cells. Other growth factorssuch as stem cell factor (SCF) may influence even more primitive celldevelopment.

It will be appreciated from the forgoing that novel hematopoietic growthfactors that affect survival, proliferation, differentiation ormaturation of any of the blood cells or predecessors thereof would beuseful, especially to assist in the re-establishment of thehematopoietic system caused by disease or after radiation- orchemo-therapy.

II. Megakaryocytopoiesis

Regulation of megakaryocytopoiesis and platelet production has beenreviewed by: Mazur, E. M. Exp Hematol 15:248 (1987) and Hoffman, R.Blood 74:1196-1212 (1989). Briefly, bone marrow pluripotent stem cellsdifferentiate into megakaryocytic, erythrocytic, and myelocytic celllines. It is believed there is a hierarchy of committed megakaryocyticprogenitor cells between stem cells and megakaryocytes. At least threeclasses of megakaryocytic progenitor cells have been identified, namely;burst forming unit megakaryocytes (BFU-MK), colony-forming unitmegakaryocytes (CFU-MK), and light density megakaryocyte progenitorcells (LD-CFU-MK). Megakaryocytic maturation itself is a continuum ofdevelopment that has been separated into stages based on standardmorphologic criteria. The earliest recognizable member of themegakaryocyte (MK) family are the megakaryoblasts. These cells areinitially 20 to 30 μm in diameter having basophilic cytoplasm and aslightly irregular nucleus with loose, somewhat reticular chromatin andseveral nucleoli. Later, megakaryoblasts may contain up to 32 nuclei,but the cytoplasm remains sparse and immature. As maturation proceeds,the nucleus becomes more lobulate and pyknotic, the cytoplasm increasesin quantity and becomes more acidophilic and granular. The most maturecells of this family may give the appearance of releasing platelets attheir periphery. Normally, less than 10% of megakaryocytes are in theblast stage and more than 50% are mature. Arbitrary morphologicclassifications commonly applied to the megakaryocyte series aremegakaryoblast for the earliest form; promegakaryocyte or basophilicmegakaryocyte for the intermediate form; and mature (acidophilic,granular, or platelet-producing) megakaryocyte for the late forms. Themature megakaryocyte extends filaments of cytoplasm into sinusoidalspaces where they detach and fragment into individual platelets(Williams et al., Hematology, 1972).

Megakaryocytopoiesis is believed to involve several regulatory factors(Williams et al., Br. J. Haematol., 52:173 [1982] and Williams et al.,J. Cell Physiol. 110:101 [1982]). The early level ofmegakaryocytopoiesis is postulated as being mitotic, concerned with cellproliferation and colony initiation from CFU-MK but is not affected byplatelet count (Burstein et al., J. Cell Physiol. 109:333 [1981] andKimura et al., Exp. Hematol. 13:1048 [1985]). The later stage ofmaturation is non-mitotic, involved with nuclear polyploidization andcytoplasmic maturation and is probably regulated in a feedback mechanismby peripheral platelet number (Odell et al., Blood 48:765 and Ebbe etal., Blood 32:787 [1968]). The existence of a distinct and specificmegakaryocyte colony-stimulating factor (MK-CSF) has been disputed(Mazur, E., Exp. Hematol. 15:340-350 [1987]). However most authorsbelieve that a process so vital to survival as platelet production wouldbe regulated by cytokine(s) exclusively responsible for this process.The hypothesis that megakaryocyte/platelet specific cytokine(s) existhas provided the basis for more than 30 years of search but to date nosuch cytokine has been purified, sequenced and established by assay as aunique MK-CSF.

Although it has been reported that MK-CSF's have been partly purifiedfrom experimentally produced thrombocytopenia (Hill et al., Exp.Hematol. 14:752 [1986]) and human embryonic kidney conditioned medium[CM] (McDonald et al., J. Lab. Clin. Med. 85:59 [1975]) and in man froma plastic anemia and idiopathic thrombocytopenic purpura urinaryextracts (Kawakita et al., Blood 6:556 [1983]) and plasma (Hoffman etal., J. Clin. Invest. 75:1174 [1985]), their physiological function isas yet unknown in most cases.

The conditioned medium of pokeweed mitogen-activated spleen cells(PWM-SpCM) and the murine myelomonocyte cell line WEHI-3 (WEHI-3CM) havebeen used as megakaryocyte potentiators. PWM-SpCM contains factorsenhancing CFU-MK growth (Metcalf et al., Pro. Natl. Acad. Sci., USA72:1744-1748 [1975]; Quesenberry et al., Blood 65:214 [1985]; andIscove, N. N., in Hematopoietic Cell Differentiation, ICN-UCLA Symposiaon Molecular and Cellular Biology, Vol. 10, Golde et al., eds. [NewYork, Academy Press] pp 37-52 [1978]), one of which is interleukin-3(IL-3), a multilineage colony stimulating factor (multi-CSF [Burstein,S. A., Blood Cells 11:469 [1986]). The other factors in this medium havenot yet been identified and isolated. WEHI-3 is a murine myelomonocyticcell line secreting relatively large amounts of IL-3 and smaller amountsof GM-CSF. IL-3 has been found to potentiate the growth of a wide rangeof hemopoietic cells (Ihle et al., J. Immunol. 13:282 [1983]). IL-3 hasalso been found to synergize with many of the known hemopoietic hormonesor growth factors (Bartelmez et al., J. Cell Physiol. 122:362-369 [1985]and Warren et al., Cell 46:667-674 [1988]), including botherythropoietin (EPO) and interleukin-1 (IL-1), in the induction of veryearly multipotential precursors and the formation of very large mixedhemopoietic colonies.

Other sources of megakaryocyte potentiators have been found in theconditioned media of murine lung, bone, macrophage cell lines,peritoneal exudate cells and human embryonic kidney cells. Despitecertain conflicting data (Mazur, E., Exp. Hematol. 15:340-350 [1987]),there is some evidence (Geissler et al., Br. J. Haematol. 60:233-238[1985]) that activated T lymphocytes rather than monocytes play anenhancing role in megakaryocytopoiesis. These findings suggest thatactivated T-lymphocyte secretions such as interleukins may be regulatoryfactors in MK development (Geissler et al., Exp. Hematol. 15:845-853[1987]). A number of studies on megakaryocytopoiesis with purifiederythropoietin EPO (Vainchenker et al., Blood 54:940 [1979]; McLeod etal., Nature 261:492-4 [1976]; and Williams et al., Exp. Hematol. 12:734[1984]) indicate that this hormone has an enhancing effect on meg colonyformation. This has also been demonstrated in both serum-free andserum-containing cultures and in the absence of accessory cells(Williams et al., Exp. Hematol. 12:734 [1984]). EPO was postulated to beinvolved more in the single and two-cell stage aspects ofmegakaryocytopoiesis as opposed to the effect of PWM-SpCM which wasinvolved in the four-cell stage of megakaryocyte development. Theinteraction of all these factors on both early and late phases ofmegakaryocyte development remains to be elucidated.

Data produced from several laboratories suggests that the onlymulti-lineage factors that individually have MK-colony stimulatingactivity are GM-CSF and IL-3 and, to a lesser extent, the B-cellstimulating factor IL-6 (Ikebuchi, K., et al., Proc Natl Acad Sci USA84:9035[1987]). More recently, several authors have reported that IL-11and leukemia inhibitory factor (LIF) act synergistically with IL-3 toincrease megakaryocyte size and ploidy (Yonemura, Y. et al., BritishJournal of Hematology 84:16-23[1993]; Burstein, S. A. et al., J CellPhysiol 153:305-312 [1992]; Metcalf, D. et al Blood 76:50-56 [1990];Metcalf, D. et al Blood 77:2150-2153 [1991]; Bruno E. et al., ExpHematol 19:378-381 [1991]; and Yonemura, Y. et al., Exp Hematol20:1011-1016 [1992]).

Other documents of interest include: Eppstein et al., U.S. Pat. No.4,962,091; Chong, U.S. Pat. No. 4,879,111; Fernandes et al., U.S. Pat.No. 4,604,377; Wissler et al., U.S. Pat. No. 4,512,971; Gottlieb, U.S.Pat. No. 4,468,379; Bennett et al., U.S. Pat. No. 5,215,895; Kogan etal., U.S. Pat. No. 5,250,732; Kimura et al., Eur. J. Immunol., 20(9):1927-1931 (1990); Secor, W. E. et al., J. of Immunol., 144(4): 1484-1489(1990); Warren, D. J., et al., J. of Immunol., 140(1): 94-99 (1988);Warren, M. K. et al., Exp. Hematol., 17(11): 1095-1099 (1989); Bruno,E., et al., Exp. Hematol., 17(10): 1038-1043 (1989); Tanikawa et al.,Exp. Hematol., 17(8): 883-888 (1989); Koike et al., Blood, 75(12):2286-2291 (1990); Lotem, et al., Blood, 75(5): 1545-1551 (1989);Rennick, D., et al., Blood, 73(7): 1828-1835 (1989); and Clutterbuck, E.J., et al., Blood, 73(6): 1504-1512 (1989).

III. Thrombocytopenia

Platelets are critical elements of the blood clotting mechanism.Depletion of the circulating level of platelets, calledthrombocytopenia, occurs in various clinical conditions and disorders.Thrombocytopenia is commonly defined as a platelet count below 150×10⁹per liter. The major causes of thrombocytopenia can be broadly dividedinto three categories on the basis of platelet life span, namely; (1)impaired production of platelets by the bone marrow, (2) plateletsequestration in the spleen (splenomegaly), or (3) increased destructionof platelets in the peripheral circulation (e.g. autoimmunethrombocytopenia or chemo- and radiation therapy). Additionally, inpatients receiving large volumes of rapidly administered platelet-poorblood products, thrombocytopenia may develop due to dilution.

The clinical bleeding manifestations of thrombocytopenia depend on theseverity of thrombocytopenia, its cause, and possible associatedcoagulation defects. In general, patients with platelet counts between20 and 100×10⁹ per liter are at risk of excessive post traumaticbleeding, while those with platelet counts below 20×10⁹ per liter maybleed spontaneously. These latter patients are candidates for platelettransfusion with attendant immune and viral risk. For any given degreeof thrombocytopenia, bleeding tends to be more severe when the cause isdecreased production rather than increased destruction of platelets; inthe latter situation, accelerated platelet turnover results in thecirculation of younger, larger and hemostatically more effectiveplatelets. Thrombocytopenia may result from a variety of disordersbriefly described below. A more detailed description may be found inSchafner, A. I., Thrombocytopenia and Disorders of Platelet Function,Internal Medicine, 3rd Ed., John J. Hutton et al., Eds., Little Brownand Co., Boston/Toronto/London, (1990).

(a) Thrombocytopenia Due to Impaired Platelet Production

Causes of congenital thrombocytopenia include constitutional a plasticanemia (Fanconi syndrome) and congenital amegakaryocyticthrombocytopenia, which may be associated with skeletal malformations.Acquired disorders of platelet production are caused by eitherhypoplasia of megakaryocytes or ineffective thrombopoiesis.Megakaryocytic hypoplasia can result from a variety of conditions,including marrow aplasia (including idiopathic forms or myelosuppressionby chemotherapeutic agents or radiation therapy), myelfibrosis,leukemia, and invasion of the bone marrow by metastatic tumor orgranulomas. In some situations, toxins, infectious agents, or drugs mayinterfere with thrombopoiesis relatively selectively; examples includetransient thrombocytopenias caused by alcohol and certain viralinfections and mild thrombocytopenia associated with the administrationof thiazide diuretics. Finally, ineffective thrombopoiesis secondary tomegaloblastic processes (folate or B₁₂ deficiency) can also causethrombocytopenia, usually with coexisting anemia and leukopenia.

Current treatment of thrombocytopenias due to decreased plateletproduction depends on identification and reversal of the underlyingcause of the bone marrow failure. Platelet transfusions are usuallyreserved for patients with serious bleeding complications or forcoverage during surgical procedures, since isoimmunization may lead torefractoriness to further platelet transfusions. Mucosal bleedingresulting from severe thrombocytopenia may be ameliorated by the oral orintravenous administration of the antifibrinolytic agents. Thromboticcomplications may develop, however, if antifibrinolytic agents are usedin patients with disseminated intravascular coagulation (DIC).

(b) Thrombocytopenia Due to Splenic Sequestration

Splenomegaly due to any cause may be associated with mild to moderatethrombocytopenia. This is a largely passive process (hypersplenism) ofsplenic platelet sequestration, in contrast to the active destruction ofplatelets by the spleen in cases of immunomediated thrombocytopeniadiscussed below. Although the most common cause of hypersplenism iscongestive splenomegaly from portal hypertension due to alcoholiccirrhosis, other forms of congestive, infiltrative, orlymphoproliferative splenomegaly are also associated withthrombocytopenia. Platelet counts generally do not fall below 50×10⁹ perliter as a result of hypersplenism alone.

(c) Thrombocytopenia Due to Nonimmune-Mediated Platelet Destruction

Thrombocytopenia can result from the accelerated destruction ofplatelets by various nonimmunologic processes. Disorders of this typeinclude disseminated intravascular coagulation, prosthetic intravasculardevices, extra corporeal circulation of the blood, and thromboticmicroangiopathies such as thrombotic thrombocytic purpura. In all ofthese situations, circulating platelets that are exposed to eitherartificial surfaces or abnormal vascular intima either are consumed atthese sites or are damaged and then prematurely cleared by thereticuloendothelial system. Disease states or disorders in whichdisseminated intravascular coagulation (DIC) may arise are set forth ingreater detail in Braunwald et al., (eds), Harrison's Principles ofInternal Medicine, 11th Ed., p. 1478, McGraw Hill (1987). Intravascularprosthetic devices, including cardiac valves and intra-aortic balloonscan cause a mild to moderate destructive thrombocytopenia and transientthrombocytopenia in patients undergoing cardiopulmonary bypass orhemodialysis may result from consumption or damage of platelets in theextra corporeal circuit.

(d) Drug-Induced Immune Thrombocytopenia

More than 100 drugs have been implicated in immunologically mediatedthrombocytopenia. However, only quinidine, quinine, gold, sulfonamides,cephalothin, and heparin have been well characterized. Drug-inducedthrombocytopenia is frequently very severe and typically occursprecipitously within days while patients are taking the sensitizingmedication.

(e) Immune (Autoimmune) Thrombocytopenic Purpura (ITP)

ITP in adults is a chronic disease characterized by autoimmune plateletdestruction. The autoantibody is usually IgG although otherimmunoglobulins have also been reported. Although the autoantibody ofITP has been found to be associated with platelet membraneGPII_(b)III_(a), the platelet antigen specificity has not beenidentified in most cases. Extravascular destruction of sensitizedplatelets occurs in the reticuloendothelial system of the spleen andliver. Although over one-half of all cases of ITP are idiopathic, manypatients have underlying rheumatic or autoimmune diseases (e.g. systemiclupus erythematosus) or lymphoproliferative disorders (e.g. chroniclymphocytic leukemia).

(f) HIV-Induced ITP

ITP is an increasingly common complication of HIV infection (Morris etal., Ann. Intern. Med., 96: 714-717 [1982]), and can occur at any stageof the disease progression, both in patients diagnosed with the AcquiredImmune Deficiency Syndrome (AIDS), those with AIDS-related complex, andthose with HIV infection but without AIDS symptoms. HIV infection is atransmissible disease ultimately characterized by a profound deficiencyof cellular immune function as well as the occurrence of opportunisticinfection and malignancy. The primary immunologic abnormality resultingfrom infection by HIV is the progressive depletion and functionalimpairment of T lymphocytes expressing the CD4 cell surface glycoprotein(H. Lane et al., Ann. Rev. Immunol., 3:477 [1985]). The loss of CD4helper/inducer T cell function probably underlies the profound defectsin cellular and humoral immunity leading to the opportunistic infectionsand malignancies characteristic of AIDS (H. Lane supra).

Although the mechanism of HIV-associated ITP is unknown, it is believedto be different from the mechanism of ITP not associated with HIVinfection. (Walsh et al., N. Eng. J. Med., 311: 635-639 [1984]; andRatner, L., Am. J. Med., 86: 194-198 [1989]).

IV. Therapy

The therapeutic approach to the treatment of patients with HIV-inducedITP is dictated by the severity and urgency of the clinical situation.The treatment is similar for HIV-associated and non-HIV-related ITP, andalthough a number of different therapeutic approaches have been used,the therapy remains controversial.

Platelet counts in patients diagnosed with ITP have been successfullyincreased by glucocorticoid (e.g. prednisolone) therapy, however in mostpatients the response is incomplete, or relapse occurs when theglucocorticoid dose is reduced or its administration is discontinued.Based upon studies with patients having HIV-associated ITP, someinvestigators have suggested that glucocorticoid therapy may result inpredisposition to AIDS. Glucocorticoids are usually administered ifplatelet count falls below 20×10⁹/liter or when spontaneous bleedingoccurs.

For patients refractory to glucocorticoids, the compound4-(2-chlorphenyl)-9-methyl-2-[3-(4-morpholinyl)-3-propanon-1-yl]6H-thieno[3,2f][1,2,4]-triazolo[4,3,a,][1,4]diazepin(WEB 2086) has been successfully used to treat a severe case of nonHIV-associated ITP. A patient having platelet counts of 37,000-58,000/μlwas treated with WEB 2086 and after 1-2 weeks treatment platelet countsincreased to 140,000-190,000/μl. (EP 0361077A2 and Lohman, H., et al.,Lancet:1147 [1988]).

Although the optimal treatment for acquired amegacaryocyticthrombocytopenia purpura (AATP) is uncertain, antithymocyte globulin(ATG), a horse antiserum to human thymus tissue, has been shown toproduce prolonged complete remission (Trimble, M. S., et al., Am. J.Hematol., 37: 126-127 [1991]). A recent report however, indicates thatthe hematopoietic effects of ATG are attributable to thimerosal, wherepresumably the protein acts as a mercury carrier (Panella, T. J., andHuang, A. T., Cancer Research: 50: 4429-4435 [1990]).

Good results have been reported with splenectomy. Splenectomy removesthe major site of platelet destruction and a major source ofautoantibody production in many patients. This procedure results inprolonged treatment-free remissions in a large number of patients.However, since surgical procedures are generally to be avoided in immunecompromised patients, splenectomy is recommended only in severe cases ofHIV-associated ITP, in patients who fail to respond to 2 to 3 weeks ofglucocorticoid treatment, or do not achieve sustained response afterdiscontinuation of glucocorticoid administration. Based upon currentscientific knowledge, it is unclear whether splenectomy predisposespatients to AIDS.

In addition to prednisolone therapy and splenectomy, certain cytotoxicagents, e.g. vincristine, and azidothimidine (AZT, zidovudine) also showpromise in treating HIV-induced ITP; however, the results arepreliminary.

It will be appreciated from the foregoing that one way to treatthrombocytopenia would be to obtain an agent capable of accelerating thedifferentiation and maturation of megakaryocytes or precursors thereofinto the platelet-producing form. Considerable efforts have beenexpended on identifying such an agent, commonly referred to as“thrombopoietin” (TPO). Other names for TPO commonly found in theliterature include; thrombocytopoiesis stimulating factor (TSF),megakaryocyte colony-stimulating factor (MK-CSF),megakaryocyte-stimulating factor and megakaryocyte potentiator. TPOactivity was observed as early as 1959 (Rak et al., Med. Exp. 1:125) andattempts to characterize and purify this agent have continued to thepresent day. While reports of partial purification of TPO-activepolypeptides exist (see, for example, Tayrien et al., J. Biol. Chem.262:3262 [1987] and Hoffman et al., J. Clin. Invest. 75:1174 [1985]),others have postulated that TPO is not a discrete entity in its ownright but rather is simply the polyfunctional manifestation of a knownhormone (IL-3, Sparrow et al., Prog. Clin. Biol. Res., 215:123 [1986]).Regardless of its form or origin, a molecule possessing thrombopoieticactivity would be of significant therapeutic value. Although no proteinhas been unambiguously identified as TPO, considerable interestsurrounds the recent discovery that mpl, a putative cytokine receptor,may transduce a thrombopoietic signal.

V. Mpl is a Cytokine Receptor

It is believed that the proliferation and maturation of hematopoieticcells is tightly regulated by factors that positively or negativelymodulate pluripotential stem cell proliferation and multilineagedifferentiation. These effects are mediated through the high-affinitybinding of extracellular protein factors to specific cell surfacereceptors. These cell surface receptors share considerable homology andare generally classified as members of the cytokine receptorsuperfamily. Members of the superfamily include receptors for: IL-2(beta and gamma chains) (Hatakeyama et al., Science 244:551-556 [1989];Takeshita et al., Science 257:379-382 [1991]), IL-3 (Itoh et al.,Science 247:324-328 [1990]; Gorman et al., Proc. Natl. Acad. Sci. USA87:5459-5463 [1990]; Kitamura et al., Cell 66:1165-1174 [1991a];Kitamura et al. Proc. Natl. Acad. Sci. USA 88:5082-5086 [1991b]), IL-4(Mosley et al., Cell 59:335-348 [1989], IL-5 (Takaki et al. EMBO J.9:4367-4374 [1990]; Tavernier et al., Cell 66:1175-1184 [1991]), IL-6(Yamasaki et al., Science 241:825-828 [1988]; Hibi et al. Cell63:1149-1157 [1990]), IL-7 (Goodwin et al. Cell 60:941-951 [1990]), IL-9(Renault et al. Proc. Natl. Acad. Sci. USA 89:5690-5694 [1992]),granulocyte-macrophage colony-stimulating factor (GM-CSF) (Gearing etal., EMBO J. 8:3667-3676 [1991]; Hayashida et al. Proc. Natl. Acad. Sci.USA 244:9655-9659 [1990]), granulocyte colony-stimulating factor (G-CSF)(Fukunaga et al., Cell 61:341-350 [1990a]; Fukunaga et al. Proc. Natl.Acad. Sci. USA 87:8702-8706 [1990b]; Larsen et al. J. Exp. Med.172:1559-1570 [1990]), EPO (D'Andrea et al., Cell 57:277-285 [1989];Jones et al., Blood 76:31-35 [1990]), Leukemia inhibitory factor (LIF)(Gearing et al., EMBO J. 10:2839-2848 [1991]), oncostatin M (OSM) (Roseet al., Proc. Natl. Acad. Sci. USA 88:8641-8645 [1991]) and alsoreceptors for prolactin (Boutin et al., Proc. Natl. Acad. Sci. USA88:7744-7748 [1988]; Edery et al., Proc. Natl. Acad. Sci. USA86:2112-2116 [1989]), growth hormone (GH) (Leung et al., Nature330:537-543 [1987]) and ciliary neurotrophic factor (CNTF) (Davis etal., Science 253:59-63 [1991].

Members of the cytokine receptor superfamily may be grouped into threefunctional categories (for review see Nicola et al., Cell 67:1-4[1991]). The first class comprises single chain receptors, such aserythropoietin receptor (EPO-R) or granulocyte colony stimulating factorreceptor (G-CSF-R), which bind ligand with high affinity via theextracellular domain and also generate an intracellular signal. A secondclass of receptors, so called α-subunits, includes interleukin-6receptor (IL6-R), granulocyte-macrophage colony stimulating factorreceptor (GM-CSF-R), interleukin-3 receptor (IL3-Rα) and other membersof the cytokine receptor superfamily. These α-subunits bind ligand withlow affinity but cannot transduce an intracellular signal. A highaffinity receptor capable of signaling is generated by a heterodimerbetween an α-subunit and a member of a third class of cytokinereceptors, termed β-subunits, e.g. β_(c), the common β-subunit for thethree α-subunits IL3-Rα and GM-CSF-R.

Evidence that mpl is a member of the cytokine receptor superfamily comesfrom sequence homology (Gearing, D. P., EMBO J. 8:3667-3676 [1988];Bazan, J. F., Proc. Natl. Acad. Sci. USA 87:6834-6938 [1990]; Davis S.,et al., Science 253:59-63 [1991] and Vigon et al., Proc. Natl. Acad.Sci. USA 89:5640-5644 [1992]) and its ability to transduce proliferativesignals.

Deduced protein sequence from molecular cloning of murine c-mpl revealsthis protein is homologous to other cytokine receptors. Theextracellular domain contains 465 amino acid residues and is composed oftwo subdomains each with four highly conserved cysteines and aparticular motif in the N-terminal subdomain and in the C-terminalsubdomain. The ligand-binding extracellular domains are predicted tohave similar double β-barrel fold structural geometries. This duplicatedextracellular domain is highly homologous to the signal transducingchain common to IL-3, IL-5 and GM-CSF receptors as well as thelow-affinity binding domain of LIF (Vigon I., et al., Oncogene8:2607-2615 [1993]). Thus mpl may belong to the low affinity ligandbinding class of cytokine receptors.

The extracellular domain is followed by a 22 residue transmembranedomain and a 121 residue cytoplasmic domain rich in serine and proline.The cytoplasmic domain contains no consensus protein kinase, phosphataseor any other known motif associated with signal transduction.

A comparison of murine mpl and mature human mpl P, reveals these twoproteins show 81% sequence identity. More specifically, the N-terminusand C-terminus extracellular subdomains share 75% and 80% sequenceidentity respectively. The most conserved mpl region is the cytoplasmicdomain showing 91% amino acid identity, with a sequence of 37 residuesnear the transmembrane domain being identical in both species.Accordingly, mpl is reported to be one of the most conserved members ofthe cytokine receptor superfamily (Vigon supra).

Evidence that mpl is a functional receptor capable of transducing aproliferative signal comes from construction of chimeric receptorscontaining an extracellular domain from a cytokine receptor having highaffinity for a known cytokine with the mpl cytoplasmic domain. Since noknown ligand for mpl has been reported, it was necessary to constructthe chimeric high affinity ligand binding extracellular domain from aclass one cytokine receptor such as IL-4R or G-CSFR. Vigon et al. suprafused the extracellular domain of G-CSFR with both the transmembrane andcytoplasmic domain of c-mpl. An IL-3 dependent cell line, BAF/B03 wastransfected with the G-CSFR/mpl chimera along with a full length G-CSFRcontrol. Cells transfected with the chimera grew equally well in thepresence of cytokine IL-3 or G-CSF. Similarly, cells transfected withG-CSFR also grew well in either IL-3 or G-CSF. All cells died in theabsence of growth factors. A similar experiment was conducted by Skoda,R. C. et al. EMBO J. 12(7):2645-2653 (1993) in which both theextracellular and transmembrane domains of human IL4 receptor (hIL4-R)were fused to the murine mpl cytoplasmic domain, and transfected into amurine IL3 dependent Ba/F3 cell line. Ba/F3 cells transfected with wildtype hIL4-R proliferated normally in the presence of either of thespecies specific IL-4 or IL-3. BaF3 cells transfected with hIL4R/mplproliferated normally in the presence of hIL4 (in the presence orabsence of IL3) demonstrating that in Ba/F3 cells the mpl cytoplasmicdomain contains all the elements necessary to transduce a proliferativesignal.

These chimeric experiments demonstrate the proliferation signalingcapability of the mpl intercellular domain but are silent regardingwhether the mpl intracellular domain can bind a ligand. These resultsare consistent with at least two possibilities, namely, mpl is a singlechain (class one) receptor like EPOR or G-CSFR or it is a signaltransducing β-subunit (class three) requiring an α-subunit like IL-3(Skoda et al. supra).

VI. Mpl Ligand Stimulates Megakaryocytopoiesis

As described above, it has been suggested that serum contains a uniquefactor, sometimes referred to as thrombopoietin, that actssynergistically with various other cytokines to promote growth andmaturation of megakaryocytes. No such natural factor has ever beenisolated from serum or any other source even though considerable efforthas been expended by numerous groups. Even though it is not knownwhether mpl is capable of directly binding a megakaryocyte stimulatingfactor, recent experiments demonstrate that mpl is involved inproliferative signal transduction from a factor or factors found in theserum of patients with aplastic bone marrow (Methia, N. et al., Blood82(5):1395-1401 [1993]).

Evidence that a unique serum colony-forming factor distinct from IL-1α,IL-3, IL-4, IL-6, IL-11, SCF, EPO, G-CSF, and GM-CSF transduces aproliferative signal through mpl comes from examination of thedistribution of c-mpl expression in primitive and committedhematopoietic cell lines and from mpl antisense studies in one of thesecell lines.

Using reverse transcriptase (RT)-PCR in immuno-purified humanhematopoietic cells, Methia et al. supra demonstrated that strong mplmRNA messages were only found in CD34⁺ purified cells, megakaryocytesand platelets. CD34⁺ cells purified from bone marrow (BM) representsabout 1% of all BM cells and are enriched in primitive and committedprogenitors of all lineages (e.g. erythroid, granulomacrophage, andmegakaryocytic).

Mpl antisense oligodeoxy nucleotides were shown to suppressmegakaryocytic colony formation from the pluripotent CD34⁺ cellscultured in serum from patients with aplastic marrow (a rich source ofmegakaryocyte colony-stimulating activity [MK-CSA]). These sameantisense oligodeoxynucleotides had no effect on erythroid orgranulomacrophage colony formation.

Whether mpl directly binds a ligand and whether the serum factor shownto cause megakaryocytopoiesis acts through mpl is still unknown. It hasbeen suggested, however, that if mpl does directly bind a ligand, itsamino acid sequence is likely to be highly conserved and have speciescross-reactivity owing to the considerable sequence identity betweenhuman and murine mpl extracellular domains (Vigon et al., supra[1993]).

In view of the foregoing it will be appreciated there is a current andcontinuing need in the art to isolate and identify molecules capable ofstimulating proliferation, differentiation and maturation ofhematopopoeitic cells, especially megakaryocytes or their predecessorsfor therapeutic use in the treatment of thrombocytopenia. It is believedsuch a molecule is a mpl ligand and thus there exists a further need toisolate such ligand(s) to evaluate their role(s) in cell growth anddifferentiation.

Accordingly, it is an object of this invention to obtain apharmaceutically pure molecule capable of stimulating proliferation,differentiation and/or maturation of megakaryocytes into the matureplatelet-producing form.

It is another object to provide the molecule in a form for therapeuticuse in the treatment of thrombocytopenia.

It is a further object of the present invention to isolate, purify andspecifically identify protein ligands capable of binding in vivo acytokine super family receptor known as mpl and to transduce aproliferative signal.

It is still another object to provide nucleic acid molecules encodingsuch protein ligands and to use this nucleic acid molecule to producempl binding ligands in recombinant cell culture for diagnostic andtherapeutic use.

It is yet another object to provide derivatives and modified forms ofthe protein ligands including amino acid sequence variants, glycoproteinforms and other covalent derivatives thereof.

It is an additional object to provide fusion polypeptide forms combininga mpl ligand and a heterologous protein and covalent derivativesthereof.

It is yet an additional object to prepare immunogens for raisingantibodies against mpl ligands or fusion forms thereof, as well as toobtain antibodies capable of binding such ligands.

These and other objects of the invention will be apparent to theordinary artisan upon consideration of the specification as a whole.

SUMMARY OF THE INVENTION

The objects of the invention are achieved by providing an isolatedmammalian megakaryocytopoietic proliferation and maturation promotingprotein capable of stimulating proliferation, maturation and/ordifferentiation of megakaryocytes into the mature platelet-producingform. This substantially homogeneous protein, denominated the “mplligand”, may be purified from a natural source by a method comprising;(1) contacting a source plasma containing the mpl ligand molecules to bepurified with an immobilized receptor polypeptide, specifically mpl or ampl fusion polypeptide immobilized on a support, under conditionswhereby the mpl ligand molecules to be purified are selectively adsorbedonto the immobilized receptor polypeptide, (2) washing the immobilizedreceptor polypeptide and its support to remove non-adsorbed material,and (3) eluting the molecules to be purified from the immobilizedreceptor polypeptide to which they are adsorbed with an elution buffer.Preferably the natural source is mammalian plasma or urine containingthe mpl ligand. Optionally the mammal is aplastic and the immobilizedreceptor is a mpl-IgG fusion. Also preferably the immobilized support iswashed with PBS/PBS in 2M NaCl and the elution buffer is 0.1Mglycine-HCl, pH 2.25.

The “mpl ligand” polypeptide of this invention preferably has at least80% sequence identity with the amino acid sequence of the highlypurified human mpl ligand or a fragment thereof. Optionally, the mplligand of this invention is mature human mpl ligand, having the matureamino acid sequence provided in FIG. 8 (SEQ ID NO: 4), or aposttranscriptionally modified form thereof or a protein having about80% sequence identity with mature human mpl ligand. Optionally the mplligand polypeptide or fragment thereof may be fused to a heterologouspolypeptide. A preferred heterologous polypeptide is a cytokine orfragment thereof, especially IL-1, IL-3, IL-6, IL-11, EPO, GM-CSF andLIF.

Another aspect of this invention provides a composition comprising anisolated mpl ligand that is biologically active and is preferablycapable of stimulating the incorporation of labeled nucleotides (e.g.³H-thymidine) into the DNA of IL-3 dependent Ba/F3 cells transfectedwith human mpl.

In another embodiment, this invention provides an isolated antibodycapable of binding to the mpl ligand. The isolated antibody capable ofbinding to the mpl ligand may optionally be fused to a secondpolypeptide and the antibody or fusion thereof may be used to isolateand purify mpl ligand from a source as described above for immobilizedmpl. In a further aspect of this embodiment, the invention provides amethod for detecting the mpl ligand in vitro or in vivo comprisingcontacting the antibody with a sample, especially a serum sample,suspected of containing the ligand and detecting if binding hasoccurred.

In still further embodiments, the invention provides an isolated nucleicacid molecule, encoding the mpl ligand or fragments thereof, whichnucleic acid molecule may optionally be labeled with a detectablemoiety, and a nucleic acid molecule having a sequence that iscomplementary to, or hybridizes under moderate to highly stringentconditions with, a nucleic acid molecule having a sequence encoding ampl ligand. Preferred nucleic acid molecules are those encoding human,procine, and murine mpl ligand, and include RNA and DNA, both genomicand cDNA. In a further aspect of this embodiment, the nucleic acidmolecule is DNA encoding the human mpl ligand where the amino acidsequence of the human mpl ligand comprises amino acid residue numbers 21to X of SEQ ID NO: 4, where X is selected from the group 174, 185, 212,226, 238, 250, 266 and 353. This embodiment further comprises areplicable vector in which the DNA is operably linked to controlsequences recognized by a host transformed with the vector. Optionallythe DNA is cDNA having the sequence provided in FIG. 8 (SEQ ID NO:5) orfragment thereof. This aspect further includes host cells transformedwith the vector and a method of using the DNA to effect production ofmpl ligand, preferably comprising expressing the cDNA encoding the mplligand in a culture of the transformed host cells and recovering the mplligand from the host cells or the host cell culture. The mpl ligandprepared in this manner is preferably human mpl ligand.

The invention further includes a method for treating a mammal having ahematopoietic disorder, especially thrombocytopenia, comprisingadministering a therapeutically effective amount of a mpl ligand to themammal. Optionally the mpl ligand is administered in combination with acytokine, especially a colony stimulating factor or interleukin.Preferred colony stimulating factors or interleukins include; LIF,G-CSF, GM-CSF, M-CSF, EPO, IL-1, IL-2, IL-3, IL-4, IL-6, IL-7, andIL-11.

BRIEF DESCRIPTION OF THE FIGURES

FIG. 1 shows the effect of pronase, DTT and heat on the ability of APPto stimulate Ba/F3-mpl cell proliferation. For pronase digestion of APP,pronase (Boehringer Mannheim) or bovine serum albumin was coupled toAffi-gel10 (Biorad) and incubated individually with APP for 18 hrs. at37° C. Subsequently, the resins were removed by centrifugation andsupernatants assayed. APP was also heated to 800° C. for 4 min. or made100 μM DTT followed by dialysis against PBS.

FIG. 2 shows the elution of mpl-ligand activity from Phenyl-Toyopearl,Blue-Sepharose and Ultralink-mpl columns. Fractions 4-8 from the mplaffinity column were the peak activity fractions eluted from the column.

FIG. 3 shows the SDS-PAGE of eluted Ultralink-mpl fractions. To 200 μlof each fraction 2-8, 1 ml of acetone containing 1 mM HCl at 20° C. wasadded. After 3 hrs. at 20° C. samples were centrifuged and resultantpellets were washed 2× with acetone at 20° C. The acetone pellets weresubsequently dissolved in 30 μl of SDS-solubilization buffer, made 100μM DTT and heated at 90° C. for 5 minutes. The samples were thenresolved on a 4-20% SDS-polyacrlyamide gel and proteins were visualizedby silver staining.

FIG. 4 shows elution of mpl-ligand activity from SDS-PAGE. Fraction 6from the mpl-affinity column was resolved on a 4-20% SDS-polyacrylamidegel under non-reducing conditions. Following electrophoresis the gel wassliced into 12 equal regions and electroeluted as described in theexamples. The electroeluted samples were dialyzed into PBS and assayedat a 1/20 dilution. The Mr standards used to calibrate the gel wereNovex Mark 12 standards.

FIG. 5 shows the effect of mpl-ligand depleted APP on humanmegakaryocytopoiesis. mpl-Ligand depleted APP was made by passing 1 mlover a 1 ml mpl-affinity column (700 μg mpl-IgG/ml NHS-superose,Pharmacia). Human peripheral stem cell cultures were made 10% APP or 10%mpl-ligand depleted APP and cultured for 12 days. Megakaryocytopoiesiswas quantitated as described in the examples.

FIG. 6. shows the effect of mpl-IgG on the stimulation of humanmegakaryocytopoiesis by APP. Human peripheral stem cell cultures weremade 10% with APP and cultured for 12 days. At day 0, 2 and 4, mpl-IgG(0.5 μg) or ANP-R-IgG (0.5 μg) was added. After 12 daysmegakaryocytopoiesis was quantitated as described in the examples. Theaverage of duplicate samples is graphed with the actual duplicate datain parenthesis.

FIG. 7. shows both strands of a 390 bp fragment of human genomic DNAencoding the mpl ligand. The deduced amino acid sequence of “exon 2”(SEQ ID NO:1), the coding sequence (SEQ ID NO:2), and its compliment(SEQ ID NO:3) are shown.

FIGS. 8 a. and 8 b. shows both strands of the nucleotide sequence;coding (SEQ ID NO:5) and its complimentary (SEQ ID NO:6) and deducedamino acid sequence (SEQ ID NO:4) of human mpl ligand cDNA and theencoded polypeptide. Nucleotides are numbered at the beginning of eachline. Amino acid residues are numbered above the sequence starting atSer 1 of the mature mpl ligand protein sequence. The position of exon 2is indicated by the arrows. The underlined sequence correspond th theN-terminal sequence determined from mpl ligand purified from porcineplasma.

FIG. 9. shows deduced amino acid sequence identity of human mpl ligand(hmpl l) (SEQ ID NO:4) and human erythropoietin (hepo) (SEQ ID NO:7).The predicted amino acid sequence for the human mpl ligand is alignedwith the human erythropoietin sequence. Identical amino acids are boxedand gaps introduced for optimal alignment are indicated by dots.

FIG. 10. shows stimulation of proliferation in Ba/F3-mpl and Ba/F3 cellswith conditioned media of 293 cells transiently transfected with humanmpl ligand (hmpl l). 293 cells were transfected by the CaPO₄ method withpRK5 vector alone or with pRK5-hmpl l overnight. Media was thenconditioned for 36 h and assayed for stimulation of proliferation ofBa/F3-mpl (A) or Ba/F3 (B) cells using the thymidine incorporation assaydescribed in Example I.

DETAILED DESCRIPTION OF THE INVENTION I. Definitions

In general, the following words or phrases have the indicated definitionwhen used in the description, examples, and claims.

“Cytokine” is a generic term for proteins released by one cellpopulation which act on another cell as intercellular mediators.Examples of such cytokines are lymphokines, monokines, and traditionalpolypeptide hormones. Included among the cytokines are growth hormone,insulin-like growth factors, human growth hormone, N-methionyl humangrowth hormone, bovine growth hormone, parathyroid hormone, thyroxine,insulin, proinsulin, relaxin, prorelaxin, glycoprotein hormones such asfollicle stimulating hormone (FSH), thyroid stimulating hormone (TSH),and leutinizing hormone (LH), hemopoietic growth factor, hepatic growthfactor, fibroblast growth factor, prolactin, placental lactogen, tumornecrosis factor-alpha and -beta, mullerian-inhibiting substance, mousegonadotropin-associated peptide, inhibin, activin, vascular endothelialgrowth factor, integrin, thrombopoietin, nerve growth factors such asNGF-β, platelet-growth factor, transforming growth factors (TGFs) suchas TGF-alpha and TGF-beta, insulin-like growth factor-I and -II,erythropoietin (EPO), osteoinductive factors, interferons such asinterferon-alpha, -beta, and -gamma, colony stimulating factors (CSFs)such as macrophage-CSF (M-CSF), granulocyte-macrophage-CSF (GM-CSF), andgranulocyte-CSF (G-CSF), interleukins (ILs) such as IL-1, IL-2, IL-3,IL-4, IL-5, IL-6, IL-7, IL-8, IL-9, IL-11 and other polypeptide factors.As used herein the foregoing terms are meant to include proteins fromnatural sources or from recombinant cell culture. Similarly, the termsare intended to include biologically active equivalents; e.g. differingin amino acid sequence by one or more amino acids or in type or extentof glycosylation.

A “mpl ligand” is any polypeptide that possesses the property of bindingto mpl, a member of the cytokine receptor superfamily, and having abiological property of the mpl ligand as defined below. An exemplary andpreferred biological property is the ability to stimulate theincorporation of labeled nucleotides (e.g. ³H-thymidine) into the DNA ofIL-3 dependent Ba/F3 cells transfected with human mpl P. This definitionencompasses the polypeptide isolated from aplastic porcine plasmadescribed herein or from another source, such as another animal species,including humans or prepared by recombinant or synthetic methods andincludes functional derivatives, fragments, alleles, isoforms andanalogus thereof.

“Isolated mpl ligands”, “highly purified mpl ligand” and “substantiallyhomogeneous mpl ligand” are used interchangeably and mean a mpl ligandthat has been purified from a mpl ligand source or has been prepared byrecombinant or synthetic methods and is sufficiently free of otherpeptides or proteins (1) to obtain at least 15 and preferably 20 aminoacid residues of the N-terminal or of an internal amino acid sequence byusing a spinning cup sequenator or the best commercially available aminoacid sequenator marketed or as modified by published methods as of thefiling date of this application, or (2) to homogeneity by SDS-PAGE undernon-reducing or reducing conditions using Coomassie blue or, preferably,silver stain. Homogeneity here means less than about 5% contaminationwith other source proteins.

“Biological property” when used in conjunction with either the “mplligand” or “Isolated mpl ligand” means an in vivo effector or antigenicfunction or activity that is directly or indirectly caused or performedby a mpl ligand (whether in its native or denatured conformation) or afragment thereof. Effector functions include mpl binding and any carrierbinding activity, agonism or antagonism of mpl, especially transductionof a proliferative signal including replication, DNA regulatoryfunction, modulation of the biological activity of other cytokines,receptor (especially cytokine) activation, deactivation, up- or downregulation, cell growth or differentiation and the like. An antigenicfunction means possession of an epitope or antigenic site that iscapable of cross-reacting with antibodies raised against the native mplligand.

“Biologically active” when used in conjunction with either the “mplligand” or “Isolated mpl ligand” means a mpl ligand or polypeptide thatshares an effector and/or antigenic function of the mpl ligand isolatedfrom aplastic porcine plasma or expressed in recombinant cell culturedescribed herein. A principal known effector function of the mpl ligandor polypeptide herein is binding to mpl and stimulating theincorporation of labeled nucleotides (³H-thymidine) into the DNA of IL-3dependent Ba/F3 cells transfected with human mpl P. The principalantigenic function of a mpl ligand polypeptide is that it binds with anaffinity of at least about 10⁶ l/mole to an antibody raised against thempl ligand isolated from aplastic porcine plasma. Ordinarily, thepolypeptide binds with an affinity of at least about 10⁷ l/mole. Mostpreferably, the antigenically active mpl ligand polypeptide is apolypeptide that binds to an antibody raised against the mpl ligandhaving one of the above described effector functions. The antibodiesused to define “biologically activity” are rabbit polyclonal antibodiesraised by formulating the mpl ligand isolated from recombinant cellculture or aplastic porcine plasma in Freund's complete adjuvant,subcutaneously injecting the formulation, and boosting the immuneresponse by intraperitoneal injection of the formulation until the titerof mpl ligand antibody plateaus.

“Percent amino acid sequence identity” with respect to the mpl ligandsequence is defined herein as the percentage of amino acid residues inthe candidate sequence that are identical with the residues in the mplligand sequence isolated from aplastic porcine plasma or the humanligand having the deduced amino acid sequence described in FIG. 8, afteraligning the sequences and introducing gaps, if necessary, to achievethe maximum percent sequence identity, and not considering anyconservative substitutions as part of the sequence identity. None ofN-terminal, C-terminal, or internal extensions, deletions, or insertionsinto the mpl ligand sequence shall be construed as affecting sequenceidentity or homology. Thus exemplary biologically active mpl ligandpolypeptides considered to have identical sequences include; prepro-mplligand, pro-mpl ligand, and mature mpl ligand.

“Mpl ligand microsequencing” may be accomplished by any appropriatestandard procedure provided the procedure is sensitive enough. In onesuch method, highly purified polypeptide obtained from SDS gels or froma final HPLC step are sequenced directly by automated Edman (phenylisothiocyanate) degradation using a model 470A Applied Biosystems gasphase sequencer equipped with a 120A phenylthiohydantion (PTH) aminoacid analyzer. Additionally, mpl ligand fragments prepared by chemical(e.g. CNBr, hydroxylamine, 2-nitro-5-thiocyanobenzoate) or enzymatic(e.g. trypsin, clostripain, staphylococcal protease) digestion followedby fragment purification (e.g. HPLC) may be similarly sequenced. PTHamino acids are analyzed using the ChromPerfect data system (JusticeInnovations, Palo Alto, Calif.). Sequence interpretation is performed ona VAX 11/785 Digital Equipment Co. computer as described by Henzel etal., J. Chromatography 404:41-52 (1987). Optionally, aliquots of HPLCfractions may be electrophoresed on 5-20% SDS-PAGE, electrotransferredto a PVDF membrane (ProBlott, AIB, Foster City, Calif.) and stained withCoomassie Brilliant Blue (Matsurdiara, P., J. Biol. Chem.262:10035-10038 (1987). A specific protein identified by the stain isexcised from the blot and N-terminal sequencing is carried out with thegas phase sequenator described above. For internal protein sequences,HPLC fractions are dried under vacuum (SpeedVac), resuspended inappropriate buffers, and digested with cyanogen bromide, theLys-specific enzyme Lys-C (Wako Chemicals, Richmond, Va.), or Asp-N(Boehringer Mannheim, Indianapolis, Ind.). After digestion, theresultant peptides are sequenced as a mixture or after HPLC resolutionon a C4 column developed with a propanol gradient in 0.1% TFA prior togas phase sequencing.

“Mpl ligand variants” or “Mpl ligand sequence variants” as definedherein means a biologically active mpl ligand as defined above havingless than 100% sequence identity with the mpl ligand isolated fromrecombinant cell culture or aplastic porcine plasma or the human ligandhaving the deduced amino-terminus sequence described in FIG. 8.Ordinarily, a biologically active mpl ligand variant will have an aminoacid sequence having at least about 70% amino acid sequence identitywith the mpl ligand isolated from aplastic porcine plasma or the maturehuman ligand or fragments thereof (see FIG. 8), preferably at leastabout 75%, more preferably at least about 80%, still more preferably atleast about 85%, even more preferably at least about 90%, and mostpreferably at least about 95%.

“Mpl ligand fragments” as used herein have a consecutive sequence of atleast 10, 15, 20, 25, 30, or 40 amino acid residues that are identicalto the sequences of the mpl ligand isolated from aplastic porcine plasmaor the human ligand having the deduced sequence described in FIG. 8. Anexample of a mpl ligand fragment is the N-terminal domain (“NTD”) havingthe sequence SPAPPACDPRLLNKLLRDDHVLHGR (SEQ ID NO: 8) orSPAPPACDLRVLSKLLRDSHVLHSRL (SEQ ID NO: 9). Other examples of mpl ligandfragments include those produced as a result of chemical or enzymaticdigestion of the purified ligand (porcine or human) as described aboveunder “Mpl ligand microsequencing”.

“Thrombocytopenia” is defined as a platelet count below 150×10⁹ perliter of blood.

“Thrombopoietic activity” is defined as biological activity thatconsists of accelerating the proliferation, differentiation and/ormaturation of megakaryocytes or megakaryocyte precursors into theplatelet producing form of these cells. This activity may be measured invarious assays including an in-vivo mouse platelet rebound synthesisassay, induction of platelet cell surface antigen assay as measured byan anti-platelet immunoassay (anti-GPII_(b)III_(a)) for a human leukemiamegakaryoblastic cell line (CMK), and induction of polyploidization in amegakaryoblastic cell line (DAMI).

“Thrombopoietin” (TPO) is defined as a compound having thrombopoieticactivity or being capable of increasing serum platelet counts in amammal. TPO is preferably capable of increasing endogenous plateletcounts by at least 10%, more preferably by 50%, and most preferablycapable of elevating platelet counts in a human to greater that 150×10⁹per liter of blood.

“Isolated mpl ligand nucleic acid” is RNA or DNA containing greater than16, preferably 20 or more, sequential nucleotide bases that encodebiologically active mpl ligand or a fragment thereof, is complementaryto the RNA or DNA, or hybridizes to the RNA or DNA and remains stablybound under moderate to stringent conditions. This RNA or DNA is freefrom at least one contaminating source nucleic acid with which it isnormally associated in the natural source and preferably substantiallyfree of any other mammalian RNA or DNA. The phrase “free from at leastone contaminating source nucleic acid with which it is normallyassociated” includes the case where the nucleic acid is present in thesource or natural cell but is in a different chromosomal location or isotherwise flanked by nucleic acid sequences not normally found in thesource cell.

An example of isolated mpl ligand nucleic acid is RNA or DNA thatencodes a biologically active mpl ligand sharing at least 75% sequenceidentity, more preferably at least 80%, still more preferably at least85%, even more preferably 90%, and most preferably 95% sequence identitywith the porcine mpl ligand.

“Control sequences” when referring to expression means DNA sequencesnecessary for the expression of an operably linked coding sequence in aparticular host organism. The control sequences that are suitable forprokaryotes, for example, include a promoter, optionally an operatorsequence, a ribosome binding site, and possibly, other as yet poorlyunderstood sequences. Eukaryotic cells are known to utilize promoters,polyadenylation signals, and enhancers.

“Operably linked” when referring to nucleic acids means that the nucleicacids are placed in a functional relationship with another nucleic acidsequence. For example, DNA for a presequence or secretory leader isoperably linked to DNA for a polypeptide if it is expressed as apreprotein that participates in the secretion of the polypeptide; apromoter or enhancer is operably linked to a coding sequence if itaffects the transcription of the sequence; or a ribosome binding site isoperably linked to a coding sequence if it is positioned so as tofacilitate translation. Generally, “operably linked” means that the DNAsequences being linked are contiguous and, in the case of a secretoryleader, contiguous and in reading phase. However, enhancers do not haveto be contiguous. Linking is accomplished by ligation at convenientrestriction sites. If such sites do not exist, the syntheticoligonucleotide adaptors or linkers are used in accord with conventionalpractice.

“Exogenous” when referring to an element means a nucleic acid sequencethat is foreign to the cell, or homologous to the cell but in a positionwithin the host cell nucleic acid in which the element is ordinarily notfound.

“Cell,” “cell line,” and “cell culture” are used interchangeably hereinand such designations include all progeny of a cell or cell line. Thus,for example terms like “transformants” and “transformed cells” includethe primary subject cell and cultures derived therefrom without regardfor the number of transfers. It is also understood that all progeny maynot be precisely identical in DNA content, due to deliberate orinadvertent mutations. Mutant progeny that have the same function orbiological activity as screened for in the originally transformed cellare included. Where distinct designations are intended, it will be clearfrom the context.

“Plasmids” are autonomously replicating circular DNA moleculespossessing independent origins of replication and are designated hereinby a lower case “p” preceded and/or followed by capital letters and/ornumbers. The starting plasmids herein are either commercially available,publicly available on an unrestricted basis, or can be constructed fromsuch available plasmids in accord with published procedures. Inaddition, other equivalent plasmids are known in the art and will beapparent to the ordinary artisan.

“Restriction enzyme digestion” when referring to DNA means catalyticcleavage of internal phosphodiester bonds of DNA with an enzyme thatacts only at certain locations or sites in the DNA sequence. Suchenzymes are called “restriction endonucleases”. Each restrictionendonuclease recognizes a specific DNA sequence called a “restrictionsite” that exhibits twofold symmetry. The various restriction enzymesused herein are commercially available and their reaction conditions,cofactors, and other requirements as established by the enzyme suppliersare used. Restriction enzymes commonly are designated by abbreviationscomposed of a capital letter followed by other letters representing themicroorganism from which each restriction enzyme originally was obtainedand then a number designating the particular enzyme. In general, about 1μg of plasmid or DNA fragment is used with about 1-2 units of enzyme inabout 20 μl of buffer solution. Appropriate buffers and substrateamounts for particular restriction enzymes are specified by themanufacturer. Incubation of about 1 hour at 37° C. is ordinarily used,but may vary in accordance with the supplier's instructions. Afterincubation, protein or polypeptide is removed by extraction with phenoland chloroform, and the digested nucleic acid is recovered from theaqueous fraction by precipitation with ethanol. Digestion with arestriction enzyme may be followed with bacterial alkaline phosphatasehydrolysis of the terminal 5′ phosphates to prevent the tworestriction-cleaved ends of a DNA fragment from “circularizing” orforming a closed loop that would impede insertion of another DNAfragment at the restriction site. Unless otherwise stated, digestion ofplasmids is not followed by 5′ terminal dephosphorylation. Proceduresand reagents for dephosphorylation are conventional as described insections 1.56-1.61 of Sambrook et al., Molecular Cloning: A LaboratoryManual [New York: Cold Spring Harbor Laboratory Press, 1989].

“Recovery” or “isolation” of a given fragment of DNA from a restrictiondigest means separation of the digest on polyacrylamide or agarose gelby electrophoresis, identification of the fragment of interest bycomparison of its mobility versus that of marker DNA fragments of knownmolecular weight, removal of the gel section containing the desiredfragment, and separation of the gel from DNA. This procedure is knowngenerally. For example, see Lawn et al., Nucleic Acids Res., 9:6103-6114(1981), and Goeddel et al., Nucleic Acids Res. 8:4057 (1980).

“Southern analysis” or “Southern blotting” is a method by which thepresence of DNA sequences in a restriction endonuclease digest of DNA orDNA-containing composition is confirmed by hybridization to a known,labeled oligonucleotide or DNA fragment. Southern analysis typicallyinvolves electrophoretic separation of DNA digests on agarose gels,denaturation of the DNA after electrophoretic separation, and transferof the DNA to nitrocellulose, nylon, or another suitable membranesupport for analysis with a radiolabeled, biotinylated, orenzyme-labeled probe as described in sections 9.37-9.52 of Sambrook etal., supra.

“Northern analysis” or “Northern blotting” is a method used to identifyRNA sequences that hybridize to a known probe such as anoligonucleotide, DNA fragment, cDNA or fragment thereof, or RNAfragment. The probe is labeled with a radioisotope such as 32-P, or bybiotinylation, or with an enzyme. The RNA to be analyzed is usuallyelectrophoretically separated on an agarose or polyacrylamide gel,transferred to nitrocellulose, nylon, or other suitable membrane, andhybridized with the probe, using standard techniques well known in theart such as those described in sections 7.39-7.52 of Sambrook et al.,supra.

“Ligation” is the process of forming phosphodiester bonds between twonucleic acid fragments. For ligation of the two fragments, the ends ofthe fragments must be compatible with each other. In some cases, theends will be directly compatible after endonuclease digestion. However,it may be necessary first to convert the staggered ends commonlyproduced after endonuclease digestion to blunt ends to make themcompatible for ligation. For blunting the ends, the DNA is treated in asuitable buffer for at least 15 minutes at 15° C. with about 10 units ofthe Klenow fragment of DNA polymerase I or T4 DNA polymerase in thepresence of the four deoxyribonucleotide triphosphates. The DNA is thenpurified by phenol-chloroform extraction and ethanol precipitation. TheDNA fragments that are to be ligated together are put in solution inabout equimolar amounts. The solution will also contain ATP, ligasebuffer, and a ligase such as T4 DNA ligase at about 10 units per 0.5 μgof DNA. If the DNA is to be ligated into a vector, the vector is firstlinearized by digestion with the appropriate restrictionendonuclease(s). The linearized fragment is then treated with bacterialalkaline phosphatase or calf intestinal phosphatase to preventself-ligation during the ligation step.

“Preparation” of DNA from cells means isolating the plasmid DNA from aculture of the host cells. Commonly used methods for DNA preparation arethe large- and small-scale plasmid preparations described in sections1.25-1.33 of Sambrook et al., supra. After preparation of the DNA, itcan be purified by methods well known in the art such as that describedin section 1.40 of Sambrook et al., supra.

“Oligonucleotides” are short-length, single- or double-strandedpolydeoxynucleotides that are chemically synthesized by known methods(such as phosphotriester, phosphite, or phosphoramidite chemistry, usingsolid-phase techniques such as described in EP 266,032 published 4 May1988, or via deoxynucleoside H-phosphonate intermediates as described byFroehler et al., Nucl. Acids Res., 14: 5399-5407 [1986]. Further methodsinclude the polymerase chain reaction defined below and other autoprimermethods and oligonucleotide syntheses on solid supports. All of thesemethods are described in Engels et al., Agnew. Chem. Int. Ed. Engl., 28:716-734 [1989]). These methods are used if the entire nucleic acidsequence of the gene is known, or the sequence of the nucleic acidcomplementary to the coding strand is available. Alternatively, if thetarget amino acid sequence is known, one may infer potential nucleicacid sequences using known and preferred coding residues for each aminoacid residue. The oligonucleotides are then purified on polyacrylamidegels.

“Polymerase chain reaction” or “PCR” refers to a procedure or techniquein which minute amounts of a specific piece of nucleic acid, RNA and/orDNA, are amplified as described in U.S. Pat. No. 4,683,195 issued 28Jul. 1987. Generally, sequence information from the ends of the regionof interest or beyond needs to be available, such that oligonucleotideprimers can be designed; these primers will be identical or similar insequence to opposite strands of the template to be amplified. The 5′terminal nucleotides of the two primers may coincide with the ends ofthe amplified material. PCR can be used to amplify specific RNAsequences, specific DNA sequences from total genomic DNA, and cDNAtranscribed from total cellular RNA, bacteriophage or plasmid sequences,etc. See generally Mullis et al., Cold Spring Harbor Symp. Quant. Biol.,51: 263 (1987); Erlich, ed., PCR Technology, (Stockton Press, NY, 1989).As used herein, PCR is considered to be one, but not the only, exampleof a nucleic acid polymerase reaction method for amplifying a nucleicacid test sample comprising the use of a known nucleic acid as a primerand a nucleic acid polymerase to amplify or generate a specific piece ofnucleic acid.

“Stringent conditions” are those that (1) employ low ionic strength andhigh temperature for washing, for example, 0.015 M NaCl/0.0015 M sodiumcitrate/0.1% NaDodSO₄ (SDS) at 50° C., or (2) employ duringhybridization a denaturing agent such as formamide, for example, 50%(vol/vol) formamide with 0.1% bovine serum albumin/0.1% Ficoll/0.1%polyvinylpyrrolidone/50 mM sodium phosphate buffer at pH 6.5 with 750 mMNaCl, 75 mM sodium citrate at 42° C. Another example is use of 50%formamide, 5×SSC (0.75 M NaCl, 0.075 M sodium citrate), 50 mM sodiumphosphate (pH 6.8), 0.1% sodium pyrophosphate, 5×Denhardt's solution,sonicated salmon sperm DNA (50 μg/ml), 0.1% SDS, and 10% dextran sulfateat 42° C., with washes at 42° C. in 0.2×SSC and 0.1% SDS.

“Moderately stringent conditions” are described in Sambrook et al supra,and include the use of a washing solution and hybridization conditions(e.g. temperature, ionic strength, and % SDS) less stringent thandescribed above. An example of moderately stringent conditions areconditions such as overnight incubation at 37° C. in a solutioncomprising: 20% formamide, 5×SSC (150 mM NaCl, 15 mM trisodium citrate),50 mM sodium phosphate (pH 7.6), 5×Denhardt's solution, 10% dextransulfate, and 20 μl/ml denatured sheared salmon sperm DNA, followed bywashing the filters in 1×SSC at about 37-50° C. The skilled artisan willrecognize how to adjust the temperature, ionic strength etc as necessaryto accommodate factors such as probe length and the like.

II. Preferred Embodiments of the Invention

Preferred polypeptides of this invention are substantially homogeneouspolypeptide(s), referred to as mpl ligand(s), that possesses theproperty of binding to mpl, a member of the receptor cytokinesuperfamily, and having the biological property of stimulating theincorporation of labeled nucleotides (³H-thymidine) into the DNA of IL-3dependent Ba/F3 cells transfected with human mpl P. More preferred mplligand(s) are isolated mammalian protein(s) having hematopoietic,especially thrombopoietic, activity—namely, being capable of stimulatingproliferation, maturation and/or differentiation of immaturemegakaryocytes or their predecessors into the mature platelet-producingform. Most preferred polypeptides of this invention are human mplligand(s) including fragments thereof having hematopoietic orthrombopoietic activity. Optionally these human mpl ligand(s) lackglycosylation.

Optional preferred polypeptides of this invention are biologicallyactive mpl ligand variant(s) that have an amino acid sequence having atleast 70% amino acid sequence identity with the human mpl ligand (seeFIG. 8) or the mpl ligand isolated from aplastic porcine plasma,preferably at least 75%, more preferably at least 80%, still morepreferably at least 85%, even more preferably at least 90%, and mostpreferably at least 95%.

The mpl ligand isolated from aplastic porcine plasma has the followingcharacteristics:

(1) The partially purified ligand isolated from aplastic porcine plasmaelutes from a gel filtration column run in either PBS, PBS containing0.1% SDS or PBS containing 4M MgCl₂ with Mr of 60,000-70,000;

(2) The ligand's activity is destroyed by pronase;

(3) The ligand is stable to low pH (2.5), SDS to 0.1%, and 2M urea;

(4) The ligand is a glycoprotein, based on its binding to a variety oflectin columns;

(5) The highly purified ligand elutes from non-reduced SDS-PAGE with aMr of 25,000-35,000. Smaller amounts of activity also elute with Mr of−18,000 and 60,000;

(6) The highly purified ligand resolves on reduced SDS-PAGE as a doubletwith Mr of 28,000 and 31,000;

(7) The amino-terminal sequence of the 18,000, 28,000 and 31,000 bandsis the same—SPAPPACDPRLLNKLLRDDHVLHGR (SEQ ID NO: 8; and

(8) The ligand binds and elutes from the following affinity columns

-   -   Blue-Sepharose,    -   CM Blue-Sepharose,    -   MONO-Q,    -   MONO-S,    -   Lentil lectin-Sepharose,    -   WGA-Sepharose,    -   Con A-Sepharose,    -   Ether 650 m Toyopearl,    -   Butyl 650 m Toyopearl,    -   Phenyl 650 m Toyopearl, and    -   Phenyl-Sepharose.

More preferred mpl ligand polypeptides are those encoded by humangenomic or cDNA having an amino acid sequence described in FIG. 8 (SEQID NO: 4).

Other preferred naturally occurring biologically active mpl ligandpolypeptides of this invention include prepro-mpl ligand, pro-mplligand, mature mpl ligand, mpl ligand fragments and glycosylationvariants thereof.

Still other preferred polypeptides of this invention include mpl ligandsequence variants. Ordinarily, preferred mpl ligand sequence variantsare biologically active mpl ligand variants that have an amino acidsequence having at least 70% amino acid sequence identity with the humanmpl ligand or the mpl ligand isolated from aplastic porcine plasma,preferably at least 75%, more preferably at least 80%, still morepreferably at least 85%, even more preferably at least 90%, and mostpreferably at least 95%. An exemplary preferred variant is a fusionbetween mpl ligand or fragment (defined below) thereof and anothercytokine or fragment thereof.

Other preferred polypeptides of this invention include mpl ligandfragments having a consecutive sequence of at least 10, 15, 20, 25, 30,or 40 amino acid residues that are identical to the sequences of the mplligand isolated from aplastic porcine plasma or the human mpl liganddescribed herein. A preferred mpl ligand fragment is the N-terminaldomain (“NTD”) having the sequence SPAPPAACDLRVLSKLLRDSHVLHSRL (SEQ IDNO:9) Other preferred mpl ligand fragments include those produced as aresult of chemical or enzymatic hydrolysis or digestion of the purifiedligand.

Another preferred aspect of the invention, is a method for purifying mplligand molecules comprises contacting a mpl ligand source containing thempl ligand molecules to be purified with an immobilized receptorpolypeptide, specifically mpl or a mpl fusion polypeptide, underconditions whereby the mpl ligand molecules to be purified areselectively adsorbed onto the immobilized receptor polypeptide, washingthe immobilized support to remove non-adsorbed material, and eluting themolecules to be purified from the immobilized receptor polypeptide towhich they are adsorbed with an elution buffer. The source containingthe mpl ligand may be plasma where the immobilized receptor ispreferably a mpl-IgG fusion.

Alternatively, the source containing the mpl ligand is recombinant cellculture where the concentration of mpl ligand in either the culturemedium or in cell lysates is generally higher than in plasma or othernatural sources. In this case the above described mpl-IgG immunoaffinitymethod, while still useful, is usually not necessary and moretraditional protein purification methods known in the art may beapplied. Briefly, the preferred purification method to providesubstantially homogeneous mpl ligand comprises: removing particulatedebris, either host cells or lysed fragments by, for example,centrifugation or ultrafiltration; optionally, protein may beconcentrated with a commercially available protein concentration filter;followed by separating the ligand from other impurities by one or moresteps selected from; immunoaffinity, ion-exchange (e.g. DEAE ormatricies containing carboxymethyl or sulfopropyl groups),Blue-Sepharose, CM Blue-Sepharose, MONO-Q, MONO-S, lentillectin-Sepharose, WGA-Sepharose, CON A-Sepharose, Ether Toypearl, ButylToypearl, Phenyl Toypearl, protein A Sepharose, SDS-PAGE, reverse phaseHPLC (e.g. silica gel with appended aliphatic groups) or Sephadexmolecular sieve or size exclusion chromatography, and ethanol orammonium precipitation. A protease inhibitor such asmethylsulfonylfluoride (PMSF) may be included in any of the foregoingsteps to inhibit proteolysis.

In another preferred embodiment, this invention provides an isolatedantibody capable of binding to the mpl ligand. A preferred mpl ligandisolated antibody is monoclonal (Kohler and Milstein Nature256:495-497[1975]; Campbell, Laboratory Techniques in Biochemistry andMolecular Biology, Burdon et al Eds, Volume 13, Elsevier SciencePublishers, Amsterdam [1985]; and Huse et al., Science 246:1275-1281[1989]). Preferred mpl ligand isolated antibody is one that binds to mplligand with an affinity of at least about 10⁶ l/mole. More preferablythe antibody binds with an affinity of at least about 10⁷ l/mole. Mostpreferably, the antibody is raised against the mpl ligand having one ofthe above described effector functions. The isolated antibody capable ofbinding to the mpl ligand may optionally be fused to a secondpolypeptide and the antibody or fusion thereof may be used to isolateand purify mpl ligand from a source as described above for immobilizedmpl polypeptide. In a further preferred aspect of this embodiment, theinvention provides a method for detecting the mpl ligand in vitro or invivo comprising contacting the antibody with a sample, especially aserum sample, suspected of containing the ligand and detecting ifbinding has occurred.

In still further preferred embodiments, the invention provides anisolated nucleic acid molecule encoding the mpl ligand or fragmentsthereof, which nucleic acid molecule may be labeled or unlabeled with adetectable moiety, and a nucleic acid molecule having a sequence that iscomplementary to, or hybridizes under stringent or moderately stringentconditions with, a nucleic acid molecule having a sequence encoding ampl ligand. A preferred mpl ligand nucleic acid is RNA or DNA thatencodes a biologically active mpl ligand sharing at least 75% sequenceidentity, more preferably at least 80%, still more preferably at least85%, even more preferably 90%, and most preferably 95% sequence identitywith the human mpl ligand. More preferred isolated nucleic acidmolecules are DNA sequences encoding biologically active mpl ligand,selected from: (a) DNA based on the coding region of a mammalian mplligand gene (e.g. DNA comprising the nucleotide sequence provided inFIG. 8, or fragments thereof); (b) DNA capable of hybridizing to a DNAof (a) under at least moderately stringent conditions; and (c) DNA thatis degenerate to a DNA defined in (a) or (b) which results fromdegeneracy of the genetic code. It is contemplated that the novel mplligands described herein may be members of a family of ligands orcytokines having suitable sequence identity that their DNA may hybridizewith the DNA of FIG. 1 (or fragments thereof) under low to moderatestringency conditions. Thus a further aspect of this invention includesDNA that hybridizes under low to moderate stringency conditions with thempl ligands.

In a further preferred embodiment of this invention, the nucleic acidmolecule is cDNA encoding the mpl ligand and further comprises areplicable vector in which the cDNA is operably linked to controlsequences recognized by a host transformed with the vector. This aspectfurther includes host cells transformed with the vector and a method ofusing the cDNA to effect production of mpl ligand, comprising expressingthe cDNA encoding the mpl ligand in a culture of the transformed hostcells and recovering the mpl ligand from the host cell culture. The mplligand prepared in this manner is preferably substantially homogeneoushuman mpl ligand.

The invention further includes a preferred method for treating a mammalhaving an immunological or hematopoetic disorder, especiallythrombocytopenia comprising administering a therapeutically effectiveamount of a mpl ligand to the mammal. Optionally, the mpl ligand isadministered in combination with a cytokine, especially a colonystimulating factor or interleukin. Preferred colony stimulating factorsor interleukins include; LIF, G-CSF, GM-CSF, M-CSF, EPO, IL-1, IL-2,IL-3, IL-5, IL-6, IL-7, IL-8, IL-9 or IL-11.

III. Methods of Making

1. Purification and Identification of mpl Ligand from Plasma

Aplastic plasma from a variety of species has been reported to containactivities that stimulate hematopoiesis in-vitro; however nohematopoietic stimulatory factor has previously been reported isolatedfrom plasma. One source of aplastic plasma is that obtained fromirradiated pigs. This aplastic porcine plasma (APP) stimulates humanhematopoiesis in-vitro. To determine if APP contained the mpl ligand,its effect on ³H-thymidine incorporation into Ba/F3 cells transfectedwith human mpl P (Ba/F3-mpl) was measured. APP stimulated ³H-thymidineincorporation into Ba/F3-mpl cells but not Ba/F3 control cells (i.e. nottransfected with human mpl P). Additionally, no such activity wasobserved in normal porcine plasma. These results indicated that APPcontained a factor or factors that transduces a proliferative signalthrough the mpl receptor and therefore may be the natural ligand forthis receptor. This was further supported by the finding that treatmentof APP with soluble mpl-IgG blocked the stimulatory effects of APP onBa/F3-mpl cells.

The activity in APP appeared to be a protein since pronase, DTT, or heatdestroy the activity in APP (FIG. 1). The activity was alsonon-dialyzable. The activity was, however, stable to low pH (pH 2.5 for2 hrs.) and was shown to bind and elute from several lectin-affinitycolumns, indicating that it was a glycoprotein. To further elucidate thestructure and identity of this activity it was affinity purified fromAPP.

Briefly, 5 liters of APP was purified according to the protocol inExample I. The recovery of activity from each step is shown in FIG. 2and the fold purification is provided in Table 1. The overall recoveryof activity through the mpl-affinity column was approximately 10%. Thepeak activity fraction (F6) from the mpl-affinity column has anestimated specific activity of 9.8×10⁶ units/mg. The overallpurification from 5 L of APP was approximately 4×10⁶ fold (0.8 units/mgto 3.3×10⁶ units/mg) with a 83×10⁶ fold reduction in protein (250 gms to3 μg).

TABLE 1 Purification of mpl Ligand Vol- Specific Fold ume Protein Units/Acitivity Yield Puri- Sample mls mg/ml ml Units Units/mg % fication APP5000 50 40 200,000 0.8 — 1 Phenyl 4700 0.8 40 200,000 50 94 62 Blue-Sep.640 0.93 400 256,000 430 128 538 mpl-UL 12 5 × 10⁻⁴ 1666 20,0003,300,000 10 4,100,000 (Fxns 5-7)Protein was determined by the Bradford assay. Protein concentration ofmpl-eluted fractions 5-7 are estimates based on staining intensity of asilver stained SDS-gel. One unit is defined as that causing 50% maximalstimulation of Ba/F3-mpl cell proliferation.

Analysis of eluted fractions from the mpl affinity column by SDS-PAGE(4-20%, Novex gel) run under reducing conditions, reveal the presence ofseveral proteins (FIG. 3). Proteins that silver stain with the strongestintensity resolve with apparent Mr of 66,000, 55,000, 30,000, 28,000 and14,000. To determine which of these proteins stimulate proliferation ofBa/F3-mpl cell cultures these proteins were eluted from the gel asdescribed in Example II.

The results of this experiment show that most of the activity elutesfrom a gel slice that includes proteins with Mr 25,000-35,000, withlesser activity eluting in the 22,000-24,000 region of the gel (FIG. 4).

To identify and obtain protein sequence for the proteins resolving inthis region of the gel, fraction 6 was electroblotted and sequenced asdescribed in Example III. The only proteins that were visible in the Mr22,000-35,000 region of the blot had Mr of 30,000, 28,000 and 22,000.

Bands at 30, 28 and 22 KDa were subjected to protein sequencing asdescribed in Example IV. Protein sequences obtained were as follows:

1) 30 KDa (SEQ ID NO: 10)  1    5      10   15    20        25(S)PAPPA(C)DPRLLNKLLRDD(H/S)VLH(G)RL 2) 28 KDa (SEQ ID NO: 11) 1    5    10   15    20      25 (S)PAPPAXDPRLLNKLLRDD(H)VL(H)GR3) 22 KDa (SEQ ID NO: 12) 1   5    10 XPAPPAXDPRLX(N)(K)

Computer-assisted analysis revealed that these sequences were novel. Thefact that these were the only sequences obtained indicates that the 30KDa, 28 KDa and 22 KDa proteins are related and may be different formsof the same novel protein. Furthermore this protein(s) was a likelycandidate as the natural mpl-ligand since the activity resolved onSDS-PAGE in the same region of a 4-20% gel (22,000-35,000). Furthermore,the partially purified ligand migrated with a Mr of 17,000-30,000 whensubjected to gel filtration chromatography using a Superose 12(Pharmacia) column. The different Mr forms of the ligand are likely aresult of proteolysis or glycosylation differences or other post orpre-translational modifications.

As described earlier, antisense human mpl RNA abrogatedmegakaryocytopoiesis in human bone marrow cultures enriched with CD 34⁺progenitor cells without affecting the differentiation of otherhemopoietic cell lineages (Methia, N et al., supra). This resultsuggested that the mpl receptor plays a role in the differentiation andproliferation of megakaryocytes in-vitro. To further elucidate the roleof the mpl-ligand in megakaryocytopoiesis, the effects of APP andmpl-ligand depleted APP on in-vitro human megakaryocytopoiesis wascompared. The effect of APP on human megakaryocytopoiesis was determinedusing a modification of the liquid suspension megakaryocytopoiesis assaydescribed by Solberg et al. (Example IV). In this assay human peripheralstem cells (PSC) are treated with APP before and after mpl-IgG affinitychromatography. GP II_(b)III_(a) stimulation of megakaryocytopoiesis isquantitated with an ¹²⁵I anti-II_(b)III_(a) antibody (FIG. 5). Shown inFIG. 5 10% APP caused approximately a 3-fold stimulation while APPdepleted of mpl-ligand had no effect. Significantly, the mpl-liganddepleted APP did not induce proliferation of the Ba/F3-mpl cells.

In another experiment, soluble human mpl-IgG added at days 0, 2 and 4 tocultures containing 10% APP neutralized the stimulatory effects of APPon human megakaryocytopoiesis (FIG. 6). These results indicate that thempl-ligand plays a role in regulating human megakaryocytopoiesis andtherefore may be useful for the treatment of thrombocytopenia. (1)

Based on the amino-terminal amino acid sequence obtained from the 30kDa, 28 kDa and 22 kDa proteins (see above), degenerate oligonucleotideswere designed for use as polymerase chain reaction (PCR) primers. If theamino-terminal amino acid sequence was encoded by a single exon then thecorrect PCR product was expected to be 69 bp. A DNA fragment of thissize was found and subcloned into pGEMT. The sequences of theoligonucleotide PCR primers and the three clones obtained are shown inExample V.

Next, a 45-mer deoxyoligonucleotide was designed and synthesized basedon the three sequences described in Example V. The 45-mer had thefollowing sequence:

5′ GCC-GTG-AAG-GAC-GTG-GTC-GTC-ACG-AAG-CAG-TTT-ATT-TAG-GAG-TCG 3′(SEQ ID NO: 13)

This deoxyoligonucleotide was used to screen a human genomic DNA libraryin λgem12 under low stringency hybridization and wash conditionsaccording to Example VI. Positive clones were picked, plaque purifiedand analyzed by restriction mapping and southern blotting. A 0.39 kbEcoRI fragment that hybridized to the 45-mer was subcloned intopBluescript SK−. DNA sequencing of this clone confirmed that DNAencoding the human homolog of the porcine mpl ligand had been isolated.The human DNA sequence and deduced amino acid sequence are shown in FIG.7. The predicted positions of introns in the genomic sequence are alsoindicated by arrows, and define a putative exon (“own 2”).

Based on the human “exon 2” sequence (Example VI) oligonucleotidescorresponding to the 3′ and 5′ ends of the exon sequence weresynthesized. These 2 primers were used in PCR reactions employing as atemplate cDNA prepared from various human tissues. The expected size ofthe correct PCR product was 140 bp. After analysis of the PCR productson a 12% polyacrylamide gel, a DNA fragment of the expected size wasdetected in cDNA libraries prepared from adult kidney, 293 fetal kidneycells and cDNA prepared from human fetal liver.

A fetal liver cDNA library in lambda DR2 was next screened with the same45 mer oligonucleotide used to screen the human genomic library and thefetal liver cDNA library was screened under low stringency hybridizationconditions. Positive clones were picked, plaque purified and the insertsize was determined by PCR. One clone with a 1.8 kb insert was selectedfor further analysis. Using the procedures described in Example VII thenucleotide and deduced amino acid sequence of the human mpl ligand wereobtained. These sequences are presented in FIG. 8 (SEQ ID NOS: 4-6).

The human mpl ligand cDNA sequence (FIG. 8) (SEQ ID NO: 5) comprises1777 nucleotides followed by a poly(A) tail. It contains 219 nucleotidesof 5′ untranslated sequence and a 3′ untranslated region of 499nucleotides. The open reading frame is 1059 nucleotides long and encodesa 353 amino acid residue polypeptide, beginning at nucleotide position220. The N-terminus of the predicted amino acid sequence is highlyhydrophobic and probably corresponds to a signal peptide. Computeranalysis of the predicted amino acid sequence (von Heijne et al., Eur.J. Biochem. 133:17-21, 1983) indicates a potential cleavage site forsignal peptidase between residues 21 and 22. Cleavage at that positionwould generate a mature polypeptide of 332 amino acid residues beginningwith the amino-terminal sequence obtained from mpl ligand purified fromporcine plasma. The predicted non-glycosylated molecular weight of the332 amino acid residue ligand is about 38 kDa. There are 6 potentialN-glycosylation sites and 4 cysteine residues.

Interestingly, comparison of the mpl ligand sequence with the Genbanksequence database indicates some homology between the amino-terminalhalf of the sequence and erythropoietin (FIG. 9) (SEQ ID Nos: 4 and 7).Three of the 4 cysteines are conserved but none of the glycosylationsites. All mpl ligand glycosylation sites are located in thecarboxy-terminal half of the mpl ligand polypeptide. Also, like theerythropoietin mRNA, the mpl ligand mRNA does not contain the consensuspolyadenylation sequence AAUAAA and does not have in its 3′ untranslatedregion the regulatory element AUUUA present in most of the cytokine 3′untranslated regions, which is believed to be involved in the regulationof mRNA stability (Shaw and Kamen, Cell 46:659-667, 1986). However, thempl ligand is 166 amino acid residues longer than erythropoietin and thefunction of this longer carboxy-terminal domain remains to beelucidated. Interestingly, this domain contains potential proteolyticcleavage sites including Arg-Arg motifs at positions 153-154 and 245-256which could indicate that processing at the carboxy-terminus may occur.Such processing could explain why the molecular mass of the mpl ligandpurified from the aplastic pig plasma is 22 to 30 kDa when thecalculated size for the amino acid sequence predicted from the cDNA is38 kDa without any glycosylation.

Expression of mpl ligand was detected after transient transfection of anexpression vector containing hmpl ligand cDNA in human embryonic kidney293 cells. Supernatant from the transfected and untransfected (control)293 cells was assayed for stimulation of proliferation in Ba/F3 andBa/F3-mpl cells (FIG. 10). Supernatant from cells transfected with humanmpl ligand had no effect on the Ba/F3 cells but dramatically stimulatedthe proliferation of Ba/F3-mpl cells, indicating that a functionallyactive human mpl ligand had been expressed.

2. Additional Methods for Measurement of Thrombopoietic Activity

In addition to the methods described immediately above, thrombopoieticactivity may be measured in various assays including an in-vivo mouseplatelet rebound synthesis assay, induction of platelet cell surfaceantigen assay as measured by an anti-platelet immunoassay(anti-GPII_(b)III_(a)) for a human leukaemia megakaryoblastic cell line(CMK) (see Sato, T., et al., Brit. J. Heamatol. 72:184-190 (1989)), andinduction of polyploidization in a megakaryoblastic cell line (DAMI)(see Ogura, M., et al., Blood 72(1):49-60 (1988). Maturation ofmegakaryocytes from immature, largely non-DNA synthesizing cells, tomorphologically identifiable megakaryocytes involves a process thatincludes appearance of cytoplasmic organelles, acquisition of membraneantigens (GPII_(b)III_(a)), endoreplication and release of platelets asdescribed in the background. A lineage specific promoter (i.e. the mplligand) of megakaryocyte maturation would be expected to induce at leastsome of these changes in immature megakaryocytes leading to plateletrelease and alleviation of thympocytopenia. Thus, assays were designedto measure the emergence of these parameters in immature megakaryocytecell lines, i.e. CMK and DAMI cells. The CMK assay (Example VIII)measures the appearance of a specific platelet marker, GPII_(b)III_(a),and platelet shedding. The DAMI assay (Example IX) measuresendoreplication since increases in ploidy are hallmarks of maturemegakaryocytes. Recognizable megakaryocytes have ploidy values of 2N,4N, 8N, 16N, 32N, etc. Finally, the in vivo assay (Example X) is usefulin demonstrating that administration of the test compound (here the mplligand) results in elevation of platelet numbers.

3. Recombinant Preparation of Mpl Ligand

Preferably mpl ligand is prepared by standard recombinant procedureswhich involve production of the mpl ligand polypeptide by culturingcells transfected to express mpl ligand nucleic acid (typically bytransforming the cells with an expression vector) and recovering thepolypeptide from the cells. However, it is optionally envisioned thatthe mpl ligand may be produced by homologous recombination, or withrecombinant production methods utilizing control elements introducedinto cells already containing DNA encoding the mpl ligand. For example,a powerful promoter/enhancer element, a suppressor, or an exogenoustranscription modulatory element may be inserted in the genome of theintended host cell in proximity and orientation sufficient to influencethe transcription of DNA encoding the desired mpl ligand polypeptide.The control element does not encode the mpl ligand, rather the DNA isindigenous to the host cell genome. One next screens for cells makingthe receptor polypeptide of this invention, or for increased ordecreased levels of expression, as desired.

Thus, the invention contemplates a method for producing mpl ligandcomprising inserting into the genome of a cell containing the mpl ligandnucleic acid molecule a transcription modulatory element in sufficientproximity and orientation to the nucleic acid molecule to influencetranscription thereof, with an optional further step comprisingculturing the cell containing the transcription modulatory element andthe nucleic acid molecule. The invention also contemplates a host cellcontaining the indigenous mpl ligand nucleic acid molecule operablylinked to exogenous control sequences recognized by the host cell.

A. Isolation of DNA Encoding mpl Ligand Polypeptide

The DNA encoding mpl ligand polypeptide may be obtained from any cDNAlibrary prepared from tissue believed to possess the mpl ligand mRNA andto express it at a detectable level. The mpl ligand gene may also beobtained from a genomic DNA library or by in vitro oligonucleotidesynthesis from the complete nucleotide or amino acid sequence.

Libraries are screened with probes designed to identify the gene ofinterest or the protein encoded by it. For cDNA expression libraries,suitable probes include monoclonal or polyclonal antibodies thatrecognize and specifically bind to the mpl ligand. For cDNA librariessuitable probes include oligonucleotides of about 20-80 bases in lengththat encode known or suspected portions of the mpl ligand cDNA from thesame or different species; and/or complementary or homologous cDNAs orfragments thereof that encode the same or a similar gene. Appropriateprobes for screening genomic DNA libraries include, but are not limitedto, oligonucleotides, cDNAs, or fragments thereof that encode the sameor a similar gene, and/or homologous genomic DNAs or fragments thereof.Screening the cDNA or genomic library with the selected probe may beconducted using standard procedures as described in Chapters 10-12 ofSambrook et al. supra.

An alternative means to isolate the gene encoding mpl ligand is to usePCR methodology as described in section 14 of Sambrook et al., supra.This method requires the use of oligonucleotide probes that willhybridize to DNA encoding the mpl ligand. Strategies for selection ofoligonucleotides are described below.

A preferred method of practicing this invention is to use carefullyselected oligonucleotide sequences to screen cDNA libraries from varioustissues, preferably human or porcine kidney (adult or fetal) or livercell lines. For example, human fetal liver cell line cDNA libraries arescreened with the oligonucleotide probes. Alternatively, human genomiclibraries may be screened with the oligonucleotide probes.

The oligonucleotide sequences selected as probes should be of sufficientlength and sufficiently unambiguous that false positives are minimized.The actual nucleotide sequence(s) is usually designed based on regionsof the mpl ligand which have the least codon redundancy. Theoligonucleotides may be degenerate at one or more positions. The use ofdegenerate oligonucleotides is of particular importance where a libraryis screened from a species in which preferential codon usage is notknown.

The oligonucleotide must be labeled such that it can be detected uponhybridization to DNA in the library being screened. The preferred methodof labeling is to use ATP (e.g., γ³²P) and polynucleotide kinase toradiolabel the 5′ end of the oligonucleotide. However, other methods maybe used to label the oligonucleotide, including, but not limited to,biotinylation or enzyme labeling.

Of particular interest is the mpl ligand nucleic acid that encodes afull-length mpl ligand polypeptide. In some preferred embodiments, thenucleic acid sequence includes the native mpl ligand signal sequence.Nucleic acid having all the protein coding sequence is obtained byscreening selected cDNA or genomic libraries using the deduced aminoacid sequence.

B. Amino Acid Sequence Variants of Native mpl Ligand

Amino acid sequence variants of mpl ligand are prepared by introducingappropriate nucleotide changes into the mpl ligand DNA, or by in vitrosynthesis of the desired mpl ligand polypeptide. Such variants include,for example, deletions from, or insertions or substitutions of, residueswithin the amino acid sequence for the porcine mpl ligand. For example,carboxy terminus portions of the mature full length mpl ligand may beremoved by proteolytic cleavage, either in vivo or in vitro, or bycloning and expressing a fragment or the DNA encoding full length mplligand to produce a biologically active variant. Any combination ofdeletion, insertion, and substitution is made to arrive at the finalconstruct, provided that the final construct possesses the desiredbiological activity. The amino acid changes also may alterpost-translational processes of the mpl ligand, such as changing thenumber or position of glycosylation sites. For the design of amino acidsequence variants of the mpl ligand, the location of the mutation siteand the nature of the mutation will depend on the mpl ligandcharacteristic(s) to be modified. The sites for mutation can be modifiedindividually or in series, e.g., by (1) substituting first withconservative amino acid choices and then with more radical selectionsdepending upon the results achieved, (2) deleting the target residue, or(3) inserting residues of the same or a different class adjacent to thelocated site, or combinations of options 1-3.

A useful method for identification of certain residues or regions of thempl ligand polypeptide that are preferred locations for mutagenesis iscalled “alanine scanning mutagenesis,” as described by Cunningham andWells, Science, 244:1081-1085 (1989). Here, a residue or group of targetresidues are identified (e.g., charged residues such as arg, asp, his,lys, and glu) and replaced by any, but preferably a neutral ornegatively charged, amino acid (most preferably alanine or polyalanine)to affect the interaction of the amino acids with the surroundingaqueous environment in or outside the cell. Those domains demonstratingfunctional sensitivity to the substitutions then are refined byintroducing further or other variants at or for the sites ofsubstitution. Thus, while the site for introducing an amino acidsequence variation is predetermined, the nature of the mutation per seneed not be predetermined. For example, to optimize the performance of amutation at a given site, ala scanning or random mutagenesis isconducted at the target codon or region and the expressed mpl ligandvariants are screened for the optimal combination of desired activity.

There are two principal variables in the construction of amino acidsequence variants: the location of the mutation site and the nature ofthe mutation. For example, variants of the mpl ligand polypeptideinclude variants from the mpl ligand sequence, and may representnaturally occurring alleles (which will not require manipulation of thempl ligand DNA) or predetermined mutant forms made by mutating the DNA,either to arrive at an allele or a variant not found in nature. Ingeneral, the location and nature of the mutation chosen will depend uponthe mpl ligand characteristic to be modified.

Amino acid sequence deletions generally range from about 1 to 30residues, more preferably about 1 to 10 residues, and typically arecontiguous. Amino acid sequence deletions for the mpl ligand may includethe entire carboxy-terminus glycoprotein domain. Contiguous deletionsordinarily are made in even numbers of residues, but single or oddnumbers of deletions are within the scope hereof. Deletions may beintroduced into regions of low homology among the mpl ligands that sharethe most sequence identity to modify the activity of the mpl ligand. Ordeletions may be introduced into regions of low homology among human mplligand and other mammalian mpl ligand polypeptides that share the mostsequence identity to the human mpl ligand. Deletions from a mammalianmpl ligand polypeptide in areas of substantial homology with othermammalian mpl ligands will be more likely to modify the biologicalactivity of the mpl ligand more significantly. The number of consecutivedeletions will be selected so as to preserve the tertiary structure ofmpl ligands in the affected domain, e.g., beta-pleated sheet or alphahelix.

Amino acid sequence insertions include amino- and/or carboxyl-terminalfusions ranging in length from one residue to polypeptides containing ahundred or more residues, as well as intrasequence insertions of singleor multiple amino acid residues. Intrasequence insertions (i.e.,insertions within the mature mpl ligand sequence) may range generallyfrom about 1 to 10 residues, more preferably 1 to 5, most preferably 1to 3. An exemplary preferred fusion is that of mpl ligand or fragmentthereof and another cytokine or fragment thereof. Examples of terminalinsertions include mature mpl ligand with an N-terminal methionylresidue, an artifact of the direct expression of mature mpl ligand inrecombinant cell culture, and fusion of a heterologous N-terminal signalsequence to the N-terminus of the mature mpl ligand molecule tofacilitate the secretion of mature mpl ligand from recombinant hosts.Such signal sequences generally will be obtained from, and thushomologous to, the intended host cell species. Suitable sequencesinclude STII or Ipp for E. coli, alpha factor for yeast, and viralsignals such as herpes gD for mammalian cells.

Other insertional variants of the mpl ligand molecule include the fusionto the N- or C-terminus of mpl ligand of immunogenic polypeptides (i.e.,not endogenous to the host to which the fusion is administered), e.g.,bacterial polypeptides such as beta-lactamase or an enzyme encoded bythe E. coli trp locus, or yeast protein, and C-terminal fusions withproteins having a long half-life such as immunoglobulin constant regions(or other immunoglobulin regions), albumin, or ferritin, as described inWO 89/02922 published 6 Apr. 1989.

A third group of variants are amino acid substitution variants. Thesevariants have at least one amino acid residue in the mpl ligand moleculeremoved and a different residue inserted in its place. The sites ofgreatest interest for substitutional mutagenesis include sitesidentified as the active site(s) of mpl ligand and sites where the aminoacids found in other analogues are substantially different in terms ofside-chain bulk, charge, or hydrophobicity, but where there is also ahigh degree of sequence identity at the selected site among various mplligand species and/or within the various animal analogues of one mplligand member.

Other sites of interest are those in which particular residues of thempl ligand obtained from various family members and/or animal specieswithin one member are identical. These sites, especially those fallingwithin a sequence of at least three other identically conserved sites,are substituted in a relatively conservative manner. Such conservativesubstitutions are shown in Table 2 under the heading of preferredsubstitutions. If such substitutions result in a change in biologicalactivity, then more substantial changes, denominated exemplarysubstitutions in Table 2, or as further described below in reference toamino acid classes, are introduced and the products screened.

TABLE 2 Original Exemplary Preferred Residue Substitutions SubstitutionsAla (A) val; leu; ile val Arg (R) lys; gln; asn lys Asn (N) gln; his;lys; arg gln Asp (D) glu glu Cys (C) ser ser Gln (Q) asn asn Glu (E) aspasp Gly (G) pro pro His (H) asn; gin; lys; arg arg Ile (I) leu; val;met; ala; phe; leu norleucine Leu (L) norleucine; ile; val; ile met;ala; phe Lys (K) arg; gln; asn arg Met (M) leu; phe; ile leu Phe (F)leu; val; ile; ala leu Pro (P) gly gly Ser (S) thr thr Thr (T) ser serTrp (W) tyr tyr Tyr (Y) trp; phe; thr, ser phe Val (V) ile; leu; met;phe; leu ala; norleucine

Substantial modifications in function or immunological identity of thempl ligand are accomplished by selecting substitutions that differsignificantly in their effect on maintaining (a) the structure of thepolypeptide backbone in the area of the substitution, for example, as asheet or helical conformation, (b) the charge or hydrophobicity of themolecule at the target site, or (c) the bulk of the side chain.Naturally occurring residues are divided into groups based on commonside-chain properties:

(1) hydrophobic: norleucine, met, ala, val, leu, ile;

(2) neutral hydrophilic: cys, ser, thr;

(3) acidic: asp, glu;

(4) basic: asn, gln, his, lys, arg;

(5) residues that influence chain orientation: gly, pro; and

(6) aromatic: trp, tyr, phe.

Non-conservative substitutions will entail exchanging a member of one ofthese classes for another. Such substituted residues also may beintroduced into the conservative substitution sites or, more preferably,into the remaining (non-conserved) sites.

In one embodiment of the invention, it is desirable to inactivate one ormore protease cleavage sites that are present in the molecule. Thesesites are identified by inspection of the encoded amino acid sequence,in the case of trypsin, e.g., for an arginyl or lysinyl residue. Whenprotease cleavage sites are identified, they are rendered inactive toproteolytic cleavage by substituting the targeted residue with anotherresidue, preferably a basic residue such as glutamine or a hydrophobicresidue such as serine; by deleting the residue; or by inserting aprolyl residue immediately after the residue.

In another embodiment, any methionyl residues other than the startingmethionyl residue of the signal sequence, or any residue located withinabout three residues N- or C-terminal to each such methionyl residue, issubstituted by another residue (preferably in accord with Table 2) ordeleted. Alternatively, about 1-3 residues are inserted adjacent to suchsites.

Any cysteine residues not involved in maintaining the properconformation of the mpl ligand also may be substituted, generally withserine, to improve the oxidative stability of the molecule and preventaberrant crosslinking.

Nucleic acid molecules encoding amino acid sequence variants of mplligand are prepared by a variety of methods known in the art. Thesemethods include, but are not limited to, isolation from a natural source(in the case of naturally occurring amino acid sequence variants) orpreparation by oligonucleotide-mediated (or site-directed) mutagenesis,PCR mutagenesis, and cassette mutagenesis of an earlier prepared variantor a non-variant version of mpl ligand polypeptide.

Oligonucleotide-mediated mutagenesis is a preferred method for preparingsubstitution, deletion, and insertion variants of mpl ligand DNA. Thistechnique is well known in the art as described by Adelman et al., DNA,2:183 (1983). Briefly, mpl ligand DNA is altered by hybridizing anoligonucleotide encoding the desired mutation to a DNA template, wherethe template is the single-stranded form of a plasmid or bacteriophagecontaining the unaltered or native DNA sequence of mpl ligand. Afterhybridization, a DNA polymerase is used to synthesize an entire secondcomplementary strand of the template that will thus incorporate theoligonucleotide primer, and will code for the selected alteration in thempl ligand DNA.

Generally, oligonucleotides of at least 25 nucleotides in length areused. An optimal oligonucleotide will have 12 to 15 nucleotides that arecompletely complementary to the template on either side of thenucleotide(s) coding for the mutation. This ensures that theoligonucleotide will hybridize properly to the single-stranded DNAtemplate molecule. The oligonucleotides are readily synthesized usingtechniques known in the art such as that described by Crea et al., Proc.Natl. Acad. Sci. USA, 75:5765 (1978).

The DNA template can be generated by those vectors that are eitherderived from bacteriophage M13 vectors (the commercially availableM13mp18 and M13mp19 vectors are suitable), or those vectors that containa single-stranded phage origin of replication as described by Viera etal. Meth. Enzymol., 153:3 (1987). Thus, the DNA that is to be mutatedmay be inserted into one of these vectors to generate single-strandedtemplate. Production of the single-stranded template is described inSections 4.21-4.41 of Sambrook et al., Molecular Cloning: A LaboratoryManual (Cold Spring Harbor Laboratory Press, NY 1989).

Alternatively, single-stranded DNA template may be generated bydenaturing double-stranded plasmid (or other) DNA using standardtechniques.

For alteration of the native DNA sequence (to generate amino acidsequence variants, for example), the oligonucleotide is hybridized tothe single-stranded template under suitable hybridization conditions. ADNA polymerizing enzyme, usually the Klenow fragment of DNA polymeraseI, is then added to synthesize the complementary strand of the templateusing the oligonucleotide as a primer for synthesis. A heteroduplexmolecule is thus formed such that one strand of DNA encodes the mutatedform of the mpl ligand, and the other strand (the original template)encodes the native, unaltered sequence of the mpl ligand. Thisheteroduplex molecule is then transformed into a suitable host cell,usually a prokaryote such as E. coli JM101. After the cells are grown,they are plated onto agarose plates and screened using theoligonucleotide primer radiolabeled with 32-phosphate to identify thebacterial colonies that contain the mutated DNA. The mutated region isthen removed and placed in an appropriate vector for protein production,generally an expression vector of the type typically employed fortransformation of an appropriate host.

The method described immediately above may be modified such that ahomoduplex molecule is created wherein both strands of the plasmidcontain the mutation(s). The modifications are as follows: Thesingle-stranded oligonucleotide is annealed to the single-strandedtemplate as described above. A mixture of three deoxyribonucleotides,deoxyriboadenosine (dATP), deoxyriboguanosine (dGTP), anddeoxyribothymidine (dTTP), is combined with a modifiedthio-deoxyribocytosine called dCTP-(aS) (which can be obtained from theAmersham Corporation). This mixture is added to thetemplate-oligonucleotide complex. Upon addition of DNA polymerase tothis mixture, a strand of DNA identical to the template except for themutated bases is generated. In addition, this new strand of DNA willcontain dCTP-(aS) instead of dCTP, which serves to protect it fromrestriction endonuclease digestion.

After the template strand of the double-stranded heteroduplex is nickedwith an appropriate restriction enzyme, the template strand can bedigested with ExoIII nuclease or another appropriate nuclease past theregion that contains the site(s) to be mutagenized. The reaction is thenstopped to leave a molecule that is only partially single-stranded. Acomplete double-stranded DNA homoduplex is then formed using DNApolymerase in the presence of all four deoxyribonucleotidetriphosphates, ATP, and DNA ligase. This homoduplex molecule can then betransformed into a suitable host cell such as E. coli JM101, asdescribed above.

DNA encoding mpl ligand mutants with more than one amino acid to besubstituted may be generated in one of several ways. If the amino acidsare located close together in the polypeptide chain, they may be mutatedsimultaneously using one oligonucleotide that codes for all of thedesired amino acid substitutions. If, however, the amino acids arelocated some distance from each other (separated by more than about tenamino acids), it is more difficult to generate a single oligonucleotidethat encodes all of the desired changes. Instead, one of two alternativemethods may be employed.

In the first method, a separate oligonucleotide is generated for eachamino acid to be substituted. The oligonucleotides are then annealed tothe single-stranded template DNA simultaneously, and the second strandof DNA that is synthesized from the template will encode all of thedesired amino acid substitutions.

The alternative method involves two or more rounds of mutagenesis toproduce the desired mutant. The first round is as described for thesingle mutants: wild-type DNA is used for the template, anoligonucleotide encoding the first desired amino acid substitution(s) isannealed to this template, and the heteroduplex DNA molecule is thengenerated. The second round of mutagenesis utilizes the mutated DNAproduced in the first round of mutagenesis as the template. Thus, thistemplate already contains one or more mutations. The oligonucleotideencoding the additional desired amino acid substitution(s) is thenannealed to this template, and the resulting strand of DNA now encodesmutations from both the first and second rounds of mutagenesis. Thisresultant DNA can be used as a template in a third round of mutagenesis,and so on. PCR mutagenesis is also suitable for making amino acidvariants of mpl ligand polypeptide. While the following discussionrefers to DNA, it is understood that the technique also findsapplication with RNA. The PCR technique generally refers to thefollowing procedure (see Erlich, supra, the chapter by R. Higuchi, p.61-70): When small amounts of template DNA are used as starting materialin a PCR, primers that differ slightly in sequence from thecorresponding region in a template DNA can be used to generaterelatively large quantities of a specific DNA fragment that differs fromthe template sequence only at the positions where the primers differfrom the template. For introduction of a mutation into a plasmid DNA,one of the primers is designed to overlap the position of the mutationand to contain the mutation; the sequence of the other primer must beidentical to a stretch of sequence of the opposite strand of theplasmid, but this sequence can be located anywhere along the plasmidDNA. It is preferred, however, that the sequence of the second primer islocated within 200 nucleotides from that of the first, such that in theend the entire amplified region of DNA bounded by the primers can beeasily sequenced. PCR amplification using a primer pair like the onejust described results in a population of DNA fragments that differ atthe position of the mutation specified by the primer, and possibly atother positions, as template copying is somewhat error-prone.

If the ratio of template to product material is extremely low, the vastmajority of product DNA fragments incorporate the desired mutation(s).This product material is used to replace the corresponding region in theplasmid that served as PCR template using standard DNA technology.Mutations at separate positions can be introduced simultaneously byeither using a mutant second primer, or performing a second PCR withdifferent mutant primers and ligating the two resulting PCR fragmentssimultaneously to the vector fragment in a three (or more)-partligation.

In a specific example of PCR mutagenesis, template plasmid DNA (1 μg) islinearized by digestion with a restriction endonuclease that has aunique recognition site in the plasmid DNA outside of the region to beamplified. Of this material, 100 ng is added to a PCR mixture containingPCR buffer, which contains the four deoxynucleotide triphosphates and isincluded in the GeneAmp® kits (obtained from Perkin-Elmer Cetus,Norwalk, Conn. and Emeryville, Calif.), and 25 pmole of eacholigonucleotide primer, to a final volume of 50 μl. The reaction mixtureis overlayed with 35 μl mineral oil. The reaction mixture is denaturedfor five minutes at 100° C., placed briefly on ice, and then 1 μlThermus aquaticus (Tag) DNA polymerase (5 units/μl, purchased fromPerkin-Elmer Cetus) is added below the mineral oil layer. The reactionmixture is then inserted into a DNA Thermal Cycler (purchased fromPerkin-Elmer Cetus) programmed as follows:

2 min. 55° C.

30 sec. 72° C., then 19 cycles of the following:

30 sec. 94° C.

30 sec. 55° C., and

30 sec. 72° C.

At the end of the program, the reaction vial is removed from the thermalcycler and the aqueous phase transferred to a new vial, extracted withphenol/chloroform (50:50 vol), and ethanol precipitated, and the DNA isrecovered by standard procedures. This material is subsequentlysubjected to the appropriate treatments for insertion into a vector.

Another method for preparing variants, cassette mutagenesis, is based onthe technique described by Wells et al., Gene, 34:315 (1985). Thestarting material is the plasmid (or other vector) comprising the mplligand DNA to be mutated. The codon(s) in the mpl ligand DNA to bemutated are identified. There must be a unique restriction endonucleasesite on each side of the identified mutation site(s). If no suchrestriction sites exist, they may be generated using the above-describedoligonucleotide-mediated mutagenesis method to introduce them atappropriate locations in the mpl ligand DNA. After the restriction siteshave been introduced into the plasmid, the plasmid is cut at these sitesto linearize it. A double-stranded oligonucleotide encoding the sequenceof the DNA between the restriction sites but containing the desiredmutation(s) is synthesized using standard procedures. The two strandsare synthesized separately and then hybridized together using standardtechniques. This double-stranded oligonucleotide is referred to as thecassette. This cassette is designed to have 3′ and 5′ ends that arecompatible with the ends of the linearized plasmid, such that it can bedirectly ligated to the plasmid. This plasmid now contains the mutatedmpl ligand DNA sequence.

C. Insertion of Nucleic Acid into a Replicable Vector

The nucleic acid (e.g., cDNA or genomic DNA) encoding native or variantmpl ligand polypeptide is inserted into a replicable vector for furthercloning (amplification of the DNA) or for expression. Many vectors areavailable, and selection of the appropriate vector will depend on 1)whether it is to be used for DNA amplification or for DNA expression, 2)the size of the nucleic acid to be inserted into the vector, and 3) thehost cell to be transformed with the vector. Each vector containsvarious components depending on its function (amplification of DNA orexpression of DNA) and the host cell with which it is compatible. Thevector components generally include, but are not limited to, one or moreof the following: a signal sequence, an origin of replication, one ormore marker genes, an enhancer element, a promoter, and a transcriptiontermination sequence.

(i) Signal Sequence Component

The mpl ligand of this invention may be expressed not only directly, butalso as a fusion with a heterologous polypeptide, preferably a signalsequence or other polypeptide having a specific cleavage site at theN-terminus of the mature protein or polypeptide. In general, the signalsequence may be a component of the vector, or it may be a part of thempl ligand DNA that is inserted into the vector. The heterologous signalsequence selected should be one that is recognized and processed (i.e.,cleaved by a signal peptidase) by the host cell. For prokaryotic hostcells that do not recognize and process the native mpl ligand signalsequence, the signal sequence is substituted by a prokaryotic signalsequence selected, for example, from the group of the alkalinephosphatase, penicillinase, Ipp, or heat-stable enterotoxin II leaders.For yeast secretion the native signal sequence may be substituted by,e.g., the yeast invertase, alpha factor, or acid phosphatase leaders,the C. albicans glucoamylase leader (EP 362,179 published 4 Apr. 1990),or the signal described in WO 90/13646 published 15 Nov. 1990. Inmammalian cell expression the native signal sequence (i.e., the mplligand presequence that normally directs secretion of mpl ligand fromits native mammalian cells in vivo) is satisfactory, although othermammalian signal sequences may be suitable, such as signal sequencesfrom other mpl ligand polypeptides or from the same mpl ligand from adifferent animal species, signal sequences from a mpl ligand, and signalsequences from secreted polypeptides of the same or related species, aswell as viral secretory leaders, for example, the herpes simplex gDsignal.

(ii) Origin of Replication Component

Both expression and cloning vectors contain a nucleic acid sequence thatenables the vector to replicate in one or more selected host cells.Generally, in cloning vectors this sequence is one that enables thevector to replicate independently of the host chromosomal DNA, andincludes origins of replication or autonomously replicating sequences.Such sequences are well known for a variety of bacteria, yeast, andviruses. The origin of replication from the plasmid pBR322 is suitablefor most Gram-negative bacteria, the 2μ plasmid origin is suitable foryeast, and various viral origins (SV40, polyoma, adenovirus, VSV or BPV)are useful for cloning vectors in mammalian cells. Generally, the originof replication component is not needed for mammalian expression vectors(the SV40 origin may typically be used only because it contains theearly promoter).

Most expression vectors are “shuttle” vectors, i.e., they are capable ofreplication in at least one class of organisms but can be transfectedinto another organism for expression. For example, a vector is cloned inE. coli and then the same vector is transfected into yeast or mammaliancells for expression even though it is not capable of replicatingindependently of the host cell chromosome.

DNA may also be amplified by insertion into the host genome. This isreadily accomplished using Bacillus species as hosts, for example, byincluding in the vector a DNA sequence that is complementary to asequence found in Bacillus genomic DNA. Transfection of Bacillus withthis vector results in homologous recombination with the genome andinsertion of mpl ligand DNA. However, the recovery of genomic DNAencoding mpl ligand is more complex than that of an exogenouslyreplicated vector because restriction enzyme digestion is required toexcise the mpl ligand DNA.

(iii) Selection Gene Component

Expression and cloning vectors should contain a selection gene, alsotermed a selectable marker. This gene encodes a protein necessary forthe survival or growth of transformed host cells grown in a selectiveculture medium. Host cells not transformed with the vector containingthe selection gene will not survive in the culture medium. Typicalselection genes encode proteins that (a) confer resistance toantibiotics or other toxins, e.g., ampicillin, neomycin, methotrexate,or tetracycline, (b) complement auxotrophic deficiencies, or (c) supplycritical nutrients not available from complex media, e.g., the geneencoding D-alanine racemase for Bacilli.

One example of a selection scheme utilizes a drug to arrest growth of ahost cell. Those cells that are successfully transformed with aheterologous gene express a protein conferring drug resistance and thussurvive the selection regimen. Examples of such dominant selection usethe drugs neomycin (Southern et al., J. Molec. Appl. Genet., 1: 327[1982]) mycophenolic acid (Mulligan et al., Science, 209: 1422 [1980])or hygromycin Sugden et al., Mol. Cell. Biol., 5: 410-413 [1985]). Thethree examples given above employ bacterial genes under eukaryoticcontrol to convey resistance to the appropriate drug G418 or neomycin(geneticin), xgpt (mycophenolic acid), or hygromycin, respectively.

Example of other suitable selectable markers for mammalian cells arethose that enable the identification of cells competent to take up thempl ligand nucleic acid, such as dihydrofolate reductase (DHFR) orthymidine kinase. The mammalian cell transformants are placed underselection pressure that only the transformants are uniquely adapted tosurvive by virtue of having taken up the marker. Selection pressure isimposed by culturing the transformants under conditions in which theconcentration of selection agent in the medium is successively changed,thereby leading to amplification of both the selection gene and the DNAthat encodes mpl ligand polypeptide. Amplification is the process bywhich genes in greater demand for the production of a protein criticalfor growth are reiterated in tandem within the chromosomes of successivegenerations of recombinant cells. Increased quantities of mpl ligand aresynthesized from the amplified DNA.

For example, cells transformed with the DHFR selection gene are firstidentified by culturing all of the transformants in a culture mediumthat contains methotrexate (Mtx), a competitive antagonist of DHFR. Anappropriate host cell when wild-type DHFR is employed is the Chinesehamster ovary (CHO) cell line deficient in DHFR activity, prepared andpropagated as described by Urlaub and Chasin, Proc. Natl. Acad. Sci.USA, 77:4216 [1980]. The transformed cells are then exposed to increasedlevels of Mtx. This leads to the synthesis of multiple copies of theDHFR gene, and, concomitantly, multiple copies of other DNA comprisingthe expression vectors, such as the DNA encoding mpl ligand. Thisamplification technique can be used with any otherwise suitable host,e.g., ATCC No. CCL61 CHO-K1, notwithstanding the presence of endogenousDHFR if, for example, a mutant DHFR gene that is highly resistant to Mtxis employed (EP 117,060). Alternatively, host cells [particularlywild-type hosts that contain endogenous DHFR] transformed orco-transformed with DNA sequences encoding mpl ligand, wild-type DHFRprotein, and another selectable marker such as aminoglycoside 3′phosphotransferase (APH) can be selected by cell growth in mediumcontaining a selection agent for the selectable marker such as anaminoglycosidic antibiotic, e.g., kanamycin, neomycin, or G418. See U.S.Pat. No. 4,965,199.

A suitable selection gene for use in yeast is the trp1 gene present inthe yeast plasmid YRp7 (Stinchcomb et al., Nature, 282:39 [1979];Kingsman et al., Gene, 7:141 [1979]; or Tschemper et al., Gene, 10: 157[1980]). The trp1 gene provides a selection marker for a mutant strainof yeast lacking the ability to grow in tryptophan, for example, ATCCNo. 44076 or PEP4-1 (Jones, Genetics, 85: 12 [1977]). The presence ofthe trp1 lesion in the yeast host cell genome then provides an effectiveenvironment for detecting transformation by growth in the absence oftryptophan. Similarly, Leu2-deficient yeast strains (ATCC 20,622 or38,626) are complemented by known plasmids bearing the Leu2 gene.

(iv) Promoter Component

Expression and cloning vectors usually contain a promoter that isrecognized by the host organism and is operably linked to the mpl ligandnucleic acid. Promoters are untranslated sequences located upstream (5′)to the start codon of a structural gene (generally within about 100 to1000 bp) that control the transcription and translation of particularnucleic acid sequence, such as the mpl ligand nucleic acid sequence, towhich they are operably linked. Such promoters typically fall into twoclasses, inducible and constitutive. Inducible promoters are promotersthat initiate increased levels of transcription from DNA under theircontrol in response to some change in culture conditions, e.g., thepresence or absence of a nutrient or a change in temperature. At thistime a large number of promoters recognized by a variety of potentialhost cells are well known. These promoters are operably linked to mplligand encoding DNA by removing the promoter from the source DNA byrestriction enzyme digestion and inserting the isolated promotersequence into the vector. Both the native mpl ligand promoter sequenceand many heterologous promoters may be used to direct amplificationand/or expression of the mpl ligand DNA. However, heterologous promotersare preferred, as they generally permit greater transcription and higheryields of expressed mpl ligand as compared to the native mpl ligandpromoter.

Promoters suitable for use with prokaryotic hosts include theβ-lactamase and lactose promoter systems (Chang et al., Nature, 275:615[1978]; and Goeddel et al., Nature, 281: 544 [1979]), alkalinephosphatase, a tryptophan (trp) promoter system (Goeddel, Nucleic AcidsRes., 8:4057 [1980] and EP 36,776) and hybrid promoters such as the tacpromoter (deBoer et al., Proc. Natl. Acad. Sci. USA, 80:21-25 [1983]).However, other known bacterial promoters are suitable. Their nucleotidesequences have been published, thereby enabling a skilled workeroperably to ligate them to DNA encoding mpl ligand (Siebenlist et al.,Cell, 20:269 [1980]) using linkers or adaptors to supply any requiredrestriction sites. Promoters for use in bacterial systems also willcontain a Shine-Dalgarno (S.D.) sequence operably linked to the DNAencoding mpl ligand polypeptide.

Promoter sequences are known for eukaryotes. Virtually all eukaryoticgenes have an AT-rich region located approximately 25 to 30 basesupstream from the site where transcription is initiated. Anothersequence found 70 to 80 bases upstream from the start of transcriptionof many genes is a CXCAAT region where X may be any nucleotide. At the3′ end of most eukaryotic genes is an AATAAA sequence that may be thesignal for addition of the poly A tail to the 3′ end of the codingsequence. All of these sequences are suitably inserted into eukaryoticexpression vectors.

Examples of suitable promoting sequences for use with yeast hostsinclude the promoters for 3-phosphoglycerate kinase (Hitzeman et al., J.Biol. Chem., 255:2073 [1980]) or other glycolytic enzymes (Hess et al.,J. Adv. Enzyme Reg., 7:149 [1968]; and Holland, Biochemistry, 17:4900[1978]), such as enolase, glyceraldehyde-3-phosphate dehydrogenase,hexokinase, pyruvate decarboxylase, phosphofructokinase,glucose-6-phosphate isomerase, 3-phosphoglycerate mutase, pyruvatekinase, triosephosphate isomerase, phosphoglucose isomerase, andglucokinase.

Other yeast promoters, which are inducible promoters having theadditional advantage of transcription controlled by growth conditions,are the promoter regions for alcohol dehydrogenase 2, isocytochrome C,acid phosphatase, degradative enzymes associated with nitrogenmetabolism, metallothionein, glyceraldehyde-3-phosphate dehydrogenase,and enzymes responsible for maltose and galactose utilization. Suitablevectors and promoters for use in yeast expression are further describedin Hitzeman et al., EP 73,657A. Yeast enhancers also are advantageouslyused with yeast promoters.

Mpl ligand transcription from vectors in mammalian host cells iscontrolled, for example, by promoters obtained from the genomes ofviruses such as polyoma virus, fowlpox virus (UK 2,211,504 published 5Jul. 1989), adenovirus (such as Adenovirus 2), bovine papilloma virus,avian sarcoma virus, cytomegalovirus, a retrovirus, hepatitis-B virusand most preferably Simian Virus 40 (SV40), from heterologous mammalianpromoters, e.g., the actin promoter or an immunoglobulin promoter, fromheat-shock promoters, and from the promoter normally associated with thempl ligand sequence, provided such promoters are compatible with thehost cell systems.

The early and late promoters of the SV40 virus are conveniently obtainedas an SV40 restriction fragment that also contains the SV40 viral originof replication. Fiers et al., Nature, 273:113 (1978); Mulligan and Berg,Science, 209:1422-1427 (1980); Pavlakis et al., Proc. Natl. Acad. Sci.USA, 78:7398-7402 (1981). The immediate early promoter of the humancytomegalovirus is conveniently obtained as a HindIII E restrictionfragment. Greenaway et al., Gene, 18:355-360 (1982). A system forexpressing DNA in mammalian hosts using the bovine papilloma virus as avector is disclosed in U.S. Pat. No. 4,419,446. A modification of thissystem is described in U.S. Pat. No. 4,601,978. See also Gray et al.,Nature, 295:503-508 (1982) on expressing cDNA encoding immune interferonin monkey cells; Reyes et al., Nature, 297:598-601 (1982) on expressionof human β-interferon cDNA in mouse cells under the control of athymidine kinase promoter from herpes simplex virus; Canaani and Berg,Proc. Natl. Acad. Sci. USA, 79: 5166-5170 (1982) on expression of thehuman interferon β1 gene in cultured mouse and rabbit cells; and Gormanet al., Proc. Natl. Acad. Sci. USA, 79: 6777-6781 (1982) on expressionof bacterial CAT sequences in CV-1 monkey kidney cells, chicken embryofibroblasts, Chinese hamster ovary cells, Hela cells, and mouse NIH-3T3cells using the Rous sarcoma virus long terminal repeat as a promoter.

(v) Enhancer Element Component

Transcription of a DNA encoding the mpl ligand of this invention byhigher eukaryotes is often increased by inserting an enhancer sequenceinto the vector. Enhancers are cis-acting elements of DNA, usually aboutfrom 10 to 300 bp, that act on a promoter to increase its transcription.Enhancers are relatively orientation and position independent, havingbeen found 5′ (Laimins et al. Proc. Natl. Acad. Sci. USA, 78:993 [1981])and 3′ (Lusky et al. Mol. Cell Bio., 3:1108 [1983]) to the transcriptionunit, within an intron (Banerji et al. Cell, 33:729 [1983]), as well aswithin the coding sequence itself (Osborne et al. Mol. Cell Bio., 4:1293[1984]). Many enhancer sequences are now known from mammalian genes(globin, elastase, albumin, a-fetoprotein, and insulin). Typically,however, one will use an enhancer from a eukaryotic cell virus. Examplesinclude the SV40 enhancer on the late side of the replication origin (bp100-270), the cytomegalovirus early promoter enhancer, the polyomaenhancer on the late side of the replication origin, and adenovirusenhancers. See also Yaniv, Nature, 297:17-18 (1982) on enhancingelements for activation of eukaryotic promoters. The enhancer may bespliced into the vector at a position 5′ or 3′ to the mpl ligandencoding sequence, but is preferably located at a site 5′ from thepromoter.

(vi) Transcription Termination Component

Expression vectors used in eukaryotic host cells (yeast, fungi, insect,plant, animal, human, or nucleated cells from other multicellularorganisms) will also contain sequences necessary for the termination oftranscription and for stabilizing the mRNA. Such sequences are commonlyavailable from the 5′ and, occasionally 3′ untranslated regions ofeukaryotic or viral DNAs or cDNAs. These regions contain nucleotidesegments transcribed as polyadenylated fragments in the untranslatedportion of the mRNA encoding mpl ligand.

(vii) Construction and Analysis of Vectors

Construction of suitable vectors containing one or more of the abovelisted components employs standard ligation techniques. Isolatedplasmids or DNA fragments are cleaved, tailored, and religated in theform desired to generate the plasmids required.

For analysis to confirm correct sequences in plasmids constructed, theligation mixtures are used to transform E. coli K12 strain 294 (ATCC31,446) and successful transformants selected by ampicillin ortetracycline resistance where appropriate. Plasmids from thetransformants are prepared, analyzed by restriction endonucleasedigestion, and/or sequenced by the method of Messing et al., NucleicAcids Res., 9:309 (1981) or by the method of Maxam et al., Methods inEnzymology, 65:499 (1980).

(viii) Transient Expression Vectors

Particularly useful in the practice of this invention are expressionvectors that provide for the transient expression in mammalian cells ofDNA encoding the mpl ligand polypeptide. In general, transientexpression involves the use of an expression vector that is able toreplicate efficiently in a host cell, such that the host cellaccumulates many copies of the expression vector and, in turn,synthesizes high levels of a desired polypeptide encoded by theexpression vector. Sambrook et al., supra, pp. 16.17-16.22. Transientexpression systems, comprising a suitable expression vector and a hostcell, allow for the convenient positive identification of polypeptidesencoded by cloned DNAs, as well as for the rapid screening of suchpolypeptides for desired biological or physiological properties. Thus,transient expression systems are particularly useful in the inventionfor purposes of identifying analogs and variants of mpl ligandpolypeptide that have mpl ligand polypeptide biological activity.

(ix) Suitable Exemplary Vertebrate Cell Vectors

Other methods, vectors, and host cells suitable for adaptation to thesynthesis of mpl ligand in recombinant vertebrate cell culture aredescribed in Gething it al., Nature, 293: 620-625 [1981]; Mantei et al.,Nature, 281:40-46 [1979]; Levinson et al.; EP 117,060; and EP 117,058. Aparticularly useful plasmid for mammalian cell culture expression of mplligand is pRK5 (EP pub. no. 307,247) or pSVI6B (PCT Publication No. WP91/08291).

D. Selection and Transformation of Host Cells

Suitable host cells for cloning or expressing the vectors herein are theprokaryote, yeast, or higher eukaryotic cells described above. Suitableprokaryotes include eubacteria, such as Gram-negative or Gram-positiveorganisms, for example, E. coli, Bacilli such as B. subtilis,Pseudomonas species such as P. aeruginosa, Salmonella typhimurium, orSerratia marcescans. One preferred E. coli cloning host is E. coli 294(ATCC 31,446), although other strains such as E. coli B, E. coli X1776(ATCC 31,537), and E. coli W3110 (ATCC 27,325) are suitable. Theseexamples are illustrative rather than limiting. Preferably the host cellshould secrete minimal amounts of proteolytic enzymes. Alternatively, invitro methods of cloning, e.g., PCR or other nucleic acid polymerasereactions, are suitable.

In addition to prokaryotes, eukaryotic microbes such as filamentousfungi or yeast are suitable hosts for mpl ligand encoding vectors.Saccharomyces cerevisiae, or common baker's yeast, is the most commonlyused among lower eukaryotic host microorganisms. However, a number ofother genera, species, and strains are commonly available and usefulherein, such as Schizosaccharomyces pombe [Beach and Nurse, Nature,290:140 (1981); EP 139,383 published May 2, 1985], Kluyveromyces hosts(U.S. Pat. No. 4,943,529) such as, e.g., K. lactis [Louvencourt et al.,J. Bacteriol., 737 (1983)], K. fragilis, K. bulgaricus, K.thermotolerans, and K. marxianus, yarrowia [EP 402,226], Pichia pastoris[EP 183,070; Sreekrishna et al., J. Basic Microbiol., 28:265-278(1988)], Candida, Trichoderma reesia [EP 244,234], Neurospora crassa[Case et al., Proc. Natl. Acad. Sci. USA, 76:5259-5263 (1979)], andfilamentous fungi such as, e.g., Neurospora, Penicillium, Tolypocladium[WO 91/00357 published 10 Jan. 1991], and Aspergillus hosts such as A.nidulans [Ballance et al., Biochem. Biophys. Res. Commun., 112: 284-289(1983); Tilburn et al., Gene, 26:205-221 (1983); Yelton et al., Proc.Natl. Acad. Sci. USA, 81:1470-1474 (1984)] and A. niger [Kelly andHynes, EMBO J., 4: 475-479 (1985)].

Suitable host cells for the expression of glycosylated mpl ligand arederived from multicellular organisms. Such host cells are capable ofcomplex processing and glycosylation activities. In principle, anyhigher eukaryotic cell culture is workable, whether from vertebrate orinvertebrate culture. Examples of invertebrate cells include plant andinsect cells. Numerous baculoviral strains and variants andcorresponding permissive insect host cells from hosts such as Spodopterafrugiperda (caterpillar), Aedes aegypti (mosquito), Aedes albopictus(mosquito), Drosophila melanogaster (fruitfly), and Bombyx mori havebeen identified. See, e.g., Luckow et al., Bio/Technology, 6:47-55(1988); Miller et al., in Genetic Engineering, Setlow, J. K. et al.,eds., Vol. 8 (Plenum Publishing, 1986), pp. 277-279; and Maeda et al.,Nature, 315: 592-594 (1985). A variety of viral strains for transfectionare publicly available, e.g., the L-1 variant of Autographa californicaNPV and the Bm-5 strain of Bombyx mori NPV, and such viruses may be usedas the virus herein according to the present invention, particularly fortransfection of Spodoptera frugiperda cells.

Plant cell cultures of cotton, corn, potato, soybean, petunia, tomato,and tobacco can be utilized as hosts. Typically, plant cells aretransfected by incubation with certain strains of the bacteriumAgrobacterium tumefaciens, which has been previously manipulated tocontain the mpl ligand DNA. During incubation of the plant cell culturewith A. tumefaciens, the DNA encoding the mpl ligand is transferred tothe plant cell host such that it is transfected, and will, underappropriate conditions, express the mpl ligand DNA. In addition,regulatory and signal sequences compatible with plant cells areavailable, such as the nopaline synthase promoter and polyadenylationsignal sequences. Depicker et al., J. Mol. Appl. Gen., 1:561 (1982). Inaddition, DNA segments isolated from the upstream region of the T-DNA780 gene are capable of activating or increasing transcription levels ofplant-expressible genes in recombinant DNA-containing plant tissue. EP321,196 published 21 Jun. 1989.

However, interest has been greatest in vertebrate cells, and propagationof vertebrate cells in culture (tissue culture) has become a routineprocedure in recent years [Tissue Culture, Academic Press, Kruse andPatterson, editors (1973)]. Examples of useful mammalian host cell linesare monkey kidney CV1 line transformed by SV40 (COS-7, ATCC CRL 1651);human embryonic kidney line (293 or 293 cells subcloned for growth insuspension culture, Graham et al. J. Gen Virol., 36:59 [1977]); babyhamster kidney cells (BHK, ATCC CCL 10); Chinese hamster ovarycells/−DHFR(CHO, Urlaub and Chasin, Proc. Natl. Acad. Sci. USA, 77:4216[1980]); mouse sertoli cells (TM4, Mather, Biol. Reprod., 23:243-251[1980];); monkey kidney cells (CV1 ATCC CCL 70); African green monkeykidney cells (VERO-76, ATCC CRL-1587); human cervical carcinoma cells(HELA, ATCC CCL 2); canine kidney cells (MDCK, ATCC CCL 34); buffalo ratliver cells (BRL 3A, ATCC CRL 1442); human lung cells (W138, ATCC CCL75); human liver cells (Hep G2, HB 8065); mouse mammary tumor (MMT060562, ATCC CCL51); TRI cells (Mather et al., Annals N.Y. Acad. Sci.,383: 44-68 [1982]); MRC 5 cells; FS4 cells; and a human hepatoma line(Hep G2).

Host cells are transfected and preferably transformed with theabove-described expression or cloning vectors of this invention andcultured in conventional nutrient media modified as appropriate forinducing promoters, selecting transformants, or amplifying the genesencoding the desired sequences.

Transfection refers to the taking up of an expression vector by a hostcell whether or not any coding sequences are in fact expressed. Numerousmethods of transfection are known to the ordinarily skilled artisan, forexample, CaPO₄ and electroporation. Successful transfection is generallyrecognized when any indication of the operation of this vector occurswithin the host cell.

Transformation means introducing DNA into an organism so that the DNA isreplicable, either as an extrachromosomal element or by chromosomalintegrant. Depending on the host cell used, transformation is done usingstandard techniques appropriate to such cells. The calcium treatmentemploying calcium chloride, as described in section 1.82 of Sambrook etal., supra, is generally used for prokaryotes or other cells thatcontain substantial cell-wall barriers. Infection with Agrobacteriumtumefaciens is used for transformation of certain plant cells, asdescribed by Shaw et al., Gene, 23: 315 (1983) and WO 89/05859 published29 Jun. 1989. In addition, plants may be transfected using ultrasoundtreatment as described in WO 91/00358 published 10 Jan. 1991. Formammalian cells without such cell walls, the calcium phosphateprecipitation method of Graham and van der Eb, Virology, 52:456-457(1978) is preferred. General aspects of mammalian cell host systemtransformations have been described by Axel in U.S. Pat. No. 4,399,216issued 16 Aug. 1983. Transformations into yeast are typically carriedout according to the method of Van Solingen et al., J. Bact., 130:946(1977) and Hsiao et al., Proc. Natl. Acad. Sci. (USA), 76:3829 (1979).However, other methods for introducing DNA into cells such as by nuclearinjection, electroporation, or protoplast fusion may also be used.

E. Culturing the Host Cells

Prokaryotic cells used to produce the mpl ligand polypeptide of thisinvention are cultured in suitable media as described generally inSambrook et al., supra.

The mammalian host cells used to produce the mpl ligand of thisinvention may be cultured in a variety of media. Commercially availablemedia such as Ham's F10 (Sigma), Minimal Essential Medium ([MEM],Sigma), RPMI-1640 (Sigma), and Dulbecco's Modified Eagle's Medium([DMEM], Sigma) are suitable for culturing the host cells. In addition,any of the media described in Ham and Wallace, Meth. Enz., 58: 44(1979), Barnes and Sato, Anal. Biochem., 102:255 (1980), U.S. Pat. No.4,767,704; U.S. Pat. No. 4,657,866; U.S. Pat. No. 4,927,762; or U.S.Pat. No. 4,560,655; WO 90/03430; WO 87/00195; U.S. Pat. Re. 30,985; orcopending U.S. Ser. No. 07/592,107 or Ser. No. 07/592,141, both filed in3 Oct. 1990, the disclosures of all of which are incorporated herein byreference, may be used as culture media for the host cells. Any of thesemedia may be supplemented as necessary with hormones and/or other growthfactors (such as insulin, transferrin, or epidermal growth factor),salts (such as sodium chloride, calcium, magnesium, and phosphate),buffers (such as HEPES), nucleosides (such as adenosine and thymidine),antibiotics (such as Gentamycin™ drug), trace elements (defined asinorganic compounds usually present at final concentrations in themicromolar range), and glucose or an equivalent energy source. Any othernecessary supplements may also be included at appropriate concentrationsthat would be known to those skilled in the art. The culture conditions,such as temperature, pH, and the like, are those previously used withthe host cell selected for expression, and will be apparent to theordinarily skilled artisan.

The host cells referred to in this disclosure encompass cells in invitro culture as well as cells that are within a host animal.

F. Detecting Gene Amplification/Expression

Gene amplification and/or expression may be measured in a sampledirectly, for example, by conventional Southern blotting, northernblotting to quantitate the transcription of mRNA (Thomas, Proc. Natl.Acad. Sci. USA, 77:5201-5205 [1980]), dot blotting (DNA analysis), or insitu hybridization, using an appropriately labeled probe, based on thesequences provided herein. Various labels may be employed, most commonlyradioisotopes, particularly ³²P. However, other techniques may also beemployed, such as using biotin-modified nucleotides for introductioninto a polynucleotide. The biotin then serves as the site for binding toavidin or antibodies, which may be labeled with a wide variety oflabels, such as radionuclides, fluorescers, enzymes, or the like.Alternatively, antibodies may be employed that can recognize specificduplexes, including DNA duplexes, RNA duplexes, and DNA-RNA hybridduplexes or DNA-protein duplexes. The antibodies in turn may be labeledand the assay may be carried out where the duplex is bound to a surface,so that upon the formation of duplex on the surface, the presence ofantibody bound to the duplex can be detected.

Gene expression, alternatively, may be measured by immunologicalmethods, such as immunohistochemical staining of tissue sections andassay of cell culture or body fluids, to quantitate directly theexpression of gene product. With immunohistochemical stainingtechniques, a cell sample is prepared, typically by dehydration andfixation, followed by reaction with labeled antibodies specific for thegene product coupled, where the labels are usually visually detectable,such as enzymatic labels, fluorescent labels, luminescent labels, andthe like. A particularly sensitive staining technique suitable for usein the present invention is described by Hsu et al., Am. J. Clin. Path.,75:734-738 (1980).

Antibodies useful for immunohistochemical staining and/or assay ofsample fluids may be either monoclonal or polyclonal, and may beprepared in any mammal. Conveniently, the antibodies may be preparedagainst a native mpl ligand polypeptide or against a synthetic peptidebased on the DNA sequences provided herein as described further below.

G. Purification of mpl Ligand Polypeptide.

Mpl ligand preferably is recovered from the culture medium as a secretedpolypeptide, although it also may be recovered from host cell lysateswhen directly expressed without a secretory signal.

When mpl ligand is expressed in a recombinant cell other than one ofhuman origin, the mpl ligand is completely free of proteins orpolypeptides of human origin. However, it is still usually necessary topurify mpl ligand from other recombinant cell proteins or polypeptidesto obtain preparations that are substantially homogeneous as to the mplligand per se. As a first step, the culture medium or lysate iscentrifuged to remove particulate cell debris. The membrane and solubleprotein fractions are then separated. Alternatively, a commerciallyavailable protein concentration filter (e.g. Amicon or MilliporePellicon ultrafiltration units) may be used. The mpl ligand may then bepurified from the soluble protein fraction and from the membranefraction of the culture lysate, depending on whether the mpl ligand ismembrane bound. Mpl ligand thereafter is purified from contaminantsoluble proteins and polypeptides by salting out and exchange orchromatographic procedures employing various gel matrices. Thesematrices include; acrylamide, agarose, dextran, cellulose and otherscommon to protein purification. Exemplary chromatography proceduressuitable for protein purification include; immunoaffinity (e.g.anti-hmpl ligand Mab), receptoraffinity (e.g. mpl-IgG or protein ASepharose), hydrophobic interaction chromatography (HIC) (e.g. ether,butyl, or phenyl Toyopearl), lectin chromatography (e.g. CONA-Sepharose, lentil-lectin-Sepharose), size exclusion (e.g. SephadexG-75), cation- and anion-exchange columns (e.g. DEAE or carboxymethyl-and sulfopropyl-cellulose), and reverse-phase high performance liquidchromatography (RP-HPLC) (see e.g. Urdal et al., J. Chromatog. 296:171[1984] where two sequential RP-HPLC steps are used to purify recombinanthuman IL-2). Other purification steps optionally include; ethanolprecipitation; ammonium sulfate precipitation; chromatofocusing;preparative SDS-PAGE, and the like.

Mpl ligand variants in which residues have been deleted, inserted, orsubstituted are recovered in the same fashion as native mpl ligand,taking account of any substantial changes in properties occasioned bythe variation. For example, preparation of a mpl ligand fusion withanother protein or polypeptide, e.g., a bacterial or viral antigen,facilitates purification; an immunoaffinity column containing antibodyto the antigen can be used to adsorb the fusion polypeptide.Immunoaffinity columns such as a rabbit polyclonal anti-mpl ligandcolumn can be employed to absorb the mpl ligand variant by binding it toat least one remaining immune epitope. Alternatively, the mpl ligand maybe purified by affinity chromatography using a purified mpl-IgG coupledto a (preferably) immobilized resin such as Affi-Gel 10 (Bio-Rad,Richmond, Calif.) or the like, by means well known in the art. Aprotease inhibitor such as phenyl methyl sulfonyl fluoride (PMSF) alsomay be useful to inhibit proteolytic degradation during purification,and antibiotics may be included to prevent the growth of adventitiouscontaminants. One skilled in the art will appreciate that purificationmethods suitable for native mpl ligand may require modification toaccount for changes in the character of mpl ligand or its variants uponexpression in recombinant cell culture.

H. Covalent Modifications of mpl Ligand Polypeptide

Covalent modifications of mpl ligand polypeptides are included withinthe scope of this invention. Both native mpl ligand and amino acidsequence variants of the mpl ligand may be covalently modified. One typeof covalent modification included within the scope of this invention isa mpl ligand fragment. Variant mpl ligand fragments having up to about40 amino acid residues may be conveniently prepared by chemicalsynthesis or by enzymatic or chemical cleavage of the full-length orvariant mpl ligand polypeptide. Other types of covalent modifications ofthe mpl ligand or fragments thereof are introduced into the molecule byreacting targeted amino acid residues of the mpl ligand or fragmentsthereof with an organic derivatizing agent that is capable of reactingwith selected side chains or the N- or C-terminal residues.

Cysteinyl residues most commonly are reacted with α-haloacetates (andcorresponding amines), such as chloroacetic acid or chloroacetamide, togive carboxymethyl or carboxyamidomethyl derivatives. Cysteinyl residuesalso are derivatized by reaction with bromotrifluoroacetone,α-bromo-β-(5-imidozoyl)propionic acid, chloroacetyl phosphate,N-alkylmaleimides, 3-nitro-2-pyridyl disulfide, methyl 2-pyridyldisulfide, p-chloromercuribenzoate, 2-chloromercuri-4-nitrophenol, orchloro-7-nitrobenzo-2-oxa-1,3-diazole.

Histidyl residues are derivatized by reaction with diethylpyrocarbonateat pH 5.5-7.0 because this agent is relatively specific for the histidylside chain. Para-bromophenacyl bromide also is useful; the reaction ispreferably performed in 0.1M sodium cacodylate at pH 6.0.

Lysinyl and amino terminal residues are reacted with succinic or othercarboxylic acid anhydrides. Derivatization with these agents has theeffect of reversing the charge of the lysinyl residues. Other suitablereagents for derivatizing-amino-containing residues include imidoesterssuch as methyl picolinimidate; pyridoxal phosphate; pyridoxal;chloroborohydride; trinitrobenzenesulfonic acid; O-methylisourea;2,4-pentanedione; and transaminase-catalyzed reaction with glyoxylate.

Arginyl residues are modified by reaction with one or severalconventional reagents, among them phenylglyoxal, 2,3-butanedione,1,2-cyclohexanedione, and ninhydrin. Derivatization of arginine residuesrequires that the reaction be performed in alkaline conditions becauseof the high pK_(a) of the guanidine functional group. Furthermore, thesereagents may react with the groups of lysine as well as the arginineepsilon-amino group.

The specific modification of tyrosyl residues may be made, withparticular interest in introducing spectral labels into tyrosyl residuesby reaction with aromatic diazonium compounds or tetranitromethane. Mostcommonly, N-acetylimidizole and tetranitromethane are used to formO-acetyl tyrosyl species and 3-nitro derivatives, respectively. Tyrosylresidues are iodinated using ¹²⁵I or ¹³¹I to prepare labeled proteinsfor use in radioimmunoassay, the chloramine T method described abovebeing suitable.

Carboxyl side groups (aspartyl or glutamyl) are selectively modified byreaction with carbodiimides (R—N═C═N—R′), where R and R′ are differentalkyl groups, such as 1-cyclohexyl-3-(2-morpholinyl-4-ethyl)carbodiimideor 1-ethyl-3-(4-azonia-4,4-dimethylpentyl)carbodiimide. Furthermore,aspartyl and glutamyl residues are converted to asparaginyl andglutaminyl residues by reaction with ammonium ions.

Derivatization with bifunctional agents is useful for crosslinking mplligand to a water-insoluble support matrix or surface for use in themethod for purifying anti-mpl ligand antibodies, and vice-versa.Commonly used crosslinking agents include, e.g.,1,1-bis(diazoacetyl)-2-phenylethane, glutaraldehyde,N-hydroxysuccinimide esters, for example, esters with 4-azidosalicylicacid, homobifunctional imidoesters, including disuccinimidyl esters suchas 3,3′-dithiobis(succinimidylpropionate), and bifunctional maleimidessuch as bis-N-maleimido-1,8-octane. Derivatizing agents such asmethyl-3-[(p-azidophenyl)dithio]propioimidate yield photoactivatableintermediates that are capable of forming crosslinks in the presence oflight. Alternatively, reactive water-insoluble matrices such as cyanogenbromide-activated carbohydrates and the reactive substrates described inU.S. Pat. Nos. 3,969,287; 3,691,016; 4,195,128; 4,247,642; 4,229,537;and 4,330,440 are employed for protein immobilization.

Glutaminyl and asparaginyl residues are frequently deamidated to thecorresponding glutamyl and aspartyl residues, respectively. Theseresidues are deamidated under neutral or basic conditions. Thedeamidated form of these residues falls within the scope of thisinvention.

Other modifications include hydroxylation of proline and lysine,phosphorylation of hydroxyl groups of seryl or threonyl residues,methylation of the α-amino groups of lysine, arginine, and histidineside chains (T. E. Creighton, Proteins: Structure and MolecularProperties, W.H. Freeman & Co., San Francisco, pp. 79-86 [1983]),acetylation of the N-terminal amine, and amidation of any C-terminalcarboxyl group.

Another type of covalent modification of the mpl ligand polypeptideincluded within the scope of this invention comprises altering thenative glycosylation pattern of the polypeptide. By altering is meantdeleting one or more carbohydrate moieties found in native mpl ligand,and/or adding one or more glycosylation sites that are not present inthe native mpl ligand.

Glycosylation of polypeptides is typically either N-linked or O-linked.N-linked refers to the attachment of the carbohydrate moiety to the sidechain of an asparagine residue. The tripeptide sequencesasparagine-X-serine and asparagine-X-threonine, where X is any aminoacid except proline, are the recognition sequences for enzymaticattachment of the carbohydrate moiety to the asparagine side chain.Thus, the presence of either of these tripeptide sequences in apolypeptide creates a potential glycosylation site. O-linkedglycosylation refers to the attachment of one of the sugarsN-aceylgalactosamine, galactose, or xylose to a hydroxyamino acid, mostcommonly serine or threonine, although 5-hydroxyproline or5-hydroxylysine may also be used.

Addition of glycosylation sites to the mpl ligand polypeptide isconveniently accomplished by altering the amino acid sequence such thatit contains one or more of the above-described tripeptide sequences (forN-linked glycosylation sites). The alteration may also be made by theaddition of, or substitution by, one or more serine or threonineresidues to the native mpl ligand sequence (for O-linked glycosylationsites). For ease, the mpl ligand amino acid sequence is preferablyaltered through changes at the DNA level, particularly by mutating theDNA encoding the mpl ligand polypeptide at preselected bases such thatcodons are generated that will translate into the desired amino acids.The DNA mutation(s) may be made using methods described above under theheading of “Amino Acid Sequence Variants of mpl Ligand.”

Another means of increasing the number of carbohydrate moieties on thempl ligand is by chemical or enzymatic coupling of glycosides to thepolypeptide. These procedures are advantageous in that they do notrequire production of the polypeptide in a host cell that hasglycosylation capabilities for N- or O-linked glycosylation. Dependingon the coupling mode used, the sugar(s) may be attached to (a) arginineand histidine, (b) free carboxyl groups, (c) free sulfhydryl groups suchas those of cysteine, (d) free hydroxyl groups such as those of serine,threonine, or hydroxyproline, (e) aromatic residues such as those ofphenylalanine, tyrosine, or tryptophan, or (f) the amide group ofglutamine. These methods are described in WO 87/05330 published 11 Sep.1987, and in Aplin and Wriston, CRC Crit. Rev. Biochem., pp. 259-306(1981).

Removal of carbohydrate moieties present on the mpl ligand polypeptidemay be accomplished chemically or enzymatically. Chemicaldeglycosylation requires exposure of the polypeptide to the compoundtrifluoromethanesulfonic acid, or an equivalent compound. This treatmentresults in the cleavage of most or all sugars except the linking sugar(N-acetylglucosamine or N-acetylgalactosamine), while leaving thepolypeptide intact. Chemical deglycosylation is described by Hakimuddin,et al., Arch. Biochem. Biophys., 259:52 (1987) and by Edge et al., Anal.Biochem., 118:131 (1981). Enzymatic cleavage of carbohydrate moieties onpolypeptides can be achieved by the use of a variety of endo- andexo-glycosidases as described by Thotakura et al., Meth. Enzymol.,138:350 (1987).

Glycosylation at potential glycosylation sites may be prevented by theuse of the compound tunicamycin as described by Duskin et al., J. Biol.Chem., 257:3105 (1982). Tunicamycin blocks the formation ofprotein-N-glycoside linkages.

Another type of covalent modification of mpl ligand comprises linkingthe mpl ligand polypeptide to one of a variety of nonproteinaceouspolymers, e.g., polyethylene glycol, polypropylene glycol, orpolyoxyalkylenes, in the manner set forth in U.S. Pat. Nos. 4,640,835;4,496,689; 4,301,144; 4,670,417; 4,791,192 or 4,179,337.

It will be appreciated that some screening of the recovered mpl ligandvariant will be needed to select the optimal variant for binding to ampl and having the immunological and/or biological activity definedabove. One can screen for stability in recombinant cell culture or inplasma (e.g., against proteolytic cleavage), high affinity to a mplmember, oxidative stability, ability to be secreted in elevated yields,and the like. For example, a change in the immunological character ofthe mpl ligand polypeptide, such as affinity for a given antibody, ismeasured by a competitive-type immunoassay. Other potentialmodifications of protein or polypeptide properties such as redox orthermal stability, hydrophobicity, or susceptibility to proteolyticdegradation are assayed by methods well known in the art.

4. Preparation of Antibodies to the mpl Ligand

Polyclonal antibodies to the mpl ligand polypeptide generally are raisedin animals by multiple subcutaneous (sc) or intraperitoneal (ip)injections of the mpl ligand polypeptide and an adjuvant. It may beuseful to conjugate the mpl ligand polypeptide (including fragmentscontaining a specific amino acid sequence) to a protein that isimmunogenic in the species to be immunized, e.g., keyhole limpethemocyanin, serum albumin, bovine thyroglobulin, or soybean trypsininhibitor using a bifunctional or derivatizing agent, for example,maleimidobenzoyl sulfosuccinimide ester (conjugation through cysteineresidues), N-hydroxysuccinimide (through lysine residues),glutaraldehyde, succinic anhydride, SOCl₂, or R¹N═C═NR, where R and R¹are different alkyl groups.

The route and schedule of immunizing a host animal or removing andculturing antibody-producing cells are generally in keeping withestablished and conventional techniques for antibody stimulation andproduction. While mice are frequently employed as the host animal, it iscontemplated that any mammalian subject including human subjects orantibody-producing cells obtained therefrom can be manipulated accordingto the processes of this invention to serve as the basis for productionof mammalian, including human, hybrid cell lines.

Animals are typically immunized against the immunogenic conjugates orderivatives by combining 1 mg or 1 μg of mpl ligand conjugate (forrabbits or mice, respectively) with 3 volumes of Freund's completeadjuvant and injecting the solution intradermally at multiple sites. Onemonth later the animals are boosted with ⅕ to 1/10 the original amountof conjugate in Freund's complete adjuvant (or other suitable adjuvant)by subcutaneous injection at multiple sites. Seven to 14 days lateranimals are bled and the serum is assayed for anti-mpl ligandpolypeptide titer. Animals are boosted until the titer plateaus.Preferably, the animal is boosted with the conjugate of the same mplligand polypeptide, but conjugated to a different protein and/or througha different cross-linking agent. Conjugates also can be made inrecombinant cell culture as protein fusions. Also, aggregating agentssuch as alum are used to enhance the immune response.

Monoclonal antibodies are prepared by recovering immune cells—typicallyspleen cells or lymphocytes from lymph node tissue—from immunizedanimals and immortalizing the cells in conventional fashion, e.g., byfusion with myeloma cells or by Epstein-Barr (EB)-virus transformationand screening for clones expressing the desired antibody. The hybridomatechnique described originally by Kohler and Milstein, Eur. J. Immunol.,6:511 (1976) and also described by Hammerling et al., In: MonoclonalAntibodies and T-Cell Hybridomas, Elsevier, N.Y., pp. 563-681 (1981) hasbeen widely applied to produce hybrid cell lines that secrete highlevels of monoclonal antibodies against many specific antigens.

It is possible to fuse cells of one species with another. However, it ispreferable that the source of the immunized antibody-producing cells andthe myeloma be from the same species.

The hybrid cell lines can be maintained in culture in vitro in cellculture media. The cell lines of this invention can be selected and/ormaintained in a composition comprising the continuous cell line inhypoxanthine-aminopterin thymidine (HAT) medium. In fact, once thehybridoma cell line is established, it can be maintained on a variety ofnutritionally adequate media. Moreover, the hybrid cell lines can bestored and preserved in any number of conventional ways, includingfreezing and storage under liquid nitrogen. Frozen cell lines can berevived and cultured indefinitely with resumed synthesis and secretionof monoclonal antibody.

The secreted antibody is recovered from tissue culture supernatant byconventional methods such as precipitation, ion exchange chromatography,affinity chromatography, or the like. The antibodies described hereinare also recovered from hybridoma cell cultures by conventional methodsfor purification of IgG or IgM, as the case may be, that heretofore havebeen used to purify these immunoglobulins from pooled plasma, e.g.,ethanol or polyethylene glycol precipitation procedures. The purifiedantibodies are sterile filtered, and optionally are conjugated to adetectable marker such as an enzyme or spin label for use in diagnosticassays of the mpl ligand in test samples.

While routinely mouse monoclonal antibodies are used, the invention isnot so limited; in fact, human antibodies may be used and may prove tobe preferable. Such antibodies can be obtained by using humanhybridomas' (Cote et al., Monoclonal Antibodies and Cancer Therapy, AlanR. Liss, p. 77 [1985]). In fact, according to the invention, techniquesdeveloped for the production of chimeric antibodies (Morrison et al.,Proc. Natl. Acad. Sci., 81:6851 [1984]; Neuberger et al., Nature,312:604 [1984]; Takeda et al., Nature, 314:452 [1985]; EP 184,187; EP171,496; EP 173,494; PCT WO 86/01533; Shaw et al., J. Nat. Canc. Inst.,80:1553-1559 [1988]; Morrison, Science, 229:1202-1207 [1985]; and Oi etal., BioTechniques, 4:214 [1986]) by splicing the genes from a mouseantibody molecule of appropriate antigen specificity together with genesfrom a human antibody molecule of appropriate biological activity (suchas ability to activate human complement and mediate ADCC) can be used;such antibodies are within the scope of this invention.

Techniques for creating recombinant DNA versions of the antigen-bindingregions of antibody molecules (known as Fab fragments), which bypass thegeneration of monoclonal antibodies, are encompassed within the practiceof this invention. One extracts antibody-specific messenger RNAmolecules from immune system cells taken from an immunized animal,transcribes these into complementary DNA (cDNA), and clones the cDNAinto a bacterial expression system. One example of such a techniquesuitable for the practice of this invention was developed by researchersat Scripps/Stratagene, and incorporates a proprietary bacteriophagelambda vector system that contains a leader sequence that causes theexpressed Fab protein to migrate to the periplasmic space (between thebacterial cell membrane and the cell wall) or to be secreted. One canrapidly generate and screen great numbers of functional Fab fragmentsfor those that bind the antigen. Such mpl ligand-binding molecules (Fabfragments with specificity for the mpl ligand polypeptide) arespecifically encompassed within the term “antibody” as it is defined,discussed, and claimed herein.

IV. Therapeutic Use of the Megakaryocytopoietic Protein

The biologically active mpl ligand having hematopoietic effectorfunction and referred to here as a megakaryocytopoietic protein may beused in a sterile pharmaceutical preparation or formulation to stimulatethrombopoietic activity in patients suffering from thrombocytopenia dueto impaired production, sequestration, or increased destruction ofplatelets. Thombocytopenia-associated bone marrow hypoplasia (e.g.,aplastic anemia following chemotherapy or bone marrow transplant) may beeffectively treated with the compounds of this invention as well asdisorders such as disseminated intravascular coagulation (DIC), immunethrombocytopenia (including HIV-induced ITP and non HIV-induced ITP),idiopathic thrombocytopenia, and thrombotic thrombocytopenia.Additionally, these megakaryocytopoietic proteins may be useful intreating myeloproliferative thrombocytotic diseases as well asthrombocytosis from inflammatory conditions and in iron deficiency.

Still other disorders usefully treated with the megakaryocytopoieticproteins of this invention include defects or damage to plateletsresulting from drugs, poisoning or activation on artificial surfaces. Inthese cases, the instant compounds may be employed to stimulate“shedding” of new “undamaged” platelets. For a more complete list ofuseful applications, see the “Background” supra, especially section(a)-(f) and references cited therein.

The megakaryocytopoietic proteins of the instant invention may beemployed alone or in combination with other cytokines, hematopoietins,interleukins, growth factors, or antibodies in the treatment of theabove-identified disorders and conditions. Thus, the instant compoundsmay be employed in combination with other protein or peptide havingthrombopoietic activity including; LIF, G-CSF, GM-CSF, LIF, M-CSF, IL-1,IL-3, IL-4, IL-5, erythropoietin (EPO), IL-6, IL-7, IL-8, and IL-11.

The megakaryocytopoietic proteins of the instant invention are preparedin a mixture with a pharmaceutically acceptable carrier. Thistherapeutic composition can be administered intravenously or through thenose or lung. The composition may also be administered parenterally orsubcutaneously as desired. When administered systematically, thetherapeutic composition should be pyrogen-free and in a parenterallyacceptable solution having due regard for pH, isotonicity, andstability. These conditions are known to those skilled in the art.Briefly, dosage formulations of the compounds of the present inventionare prepared for storage or administration by mixing the compound havingthe desired degree of purity with physiologically acceptable carriers,excipients, or stabilizers. Such materials are non-toxic to therecipients at the dosages and concentrations employed, and includebuffers such as phosphate, citrate, acetate and other organic acidsalts; antioxidants such as ascorbic acid; low molecular weight (lessthan about ten residues) peptides such as polyarginine, proteins, suchas serum albumin, gelatin, or immunoglobulins; hydrophilic polymers suchas polyvinylpyrrolidinone; amino acids such as glycine, glutamic acid,aspartic acid, or arginine; monosaccharides, disaccharides, and othercarbohydrates including cellulose or its derivatives, glucose, mannose,or dextrins; chelating agents such as EDTA; sugar alcohols such asmannitol or sobitol; counterions such as sodium and/or nonionicsurfactants such as Tween, Pluronics or polyethyleneglycol.

About 0.5 to 500 mg of a compound or mixture of the megakaryocytopoieticprotein as the free acid or base form or as a pharmaceuticallyacceptable salt, is compounded with a physiologically acceptablevehicle, carrier, excipient, binder, preservative, stabilizer, flavor,etc., as called for by accepted pharmaceutical practice. The amount ofactive ingredient in these compositions is such that a suitable dosagein the range indicated is obtained.

Sterile compositions for injection can be formulated according toconventional pharmaceutical practice. For example, dissolution orsuspension of the active compound in a vehicle such as water ornaturally occurring vegetable oil like sesame, peanut, or cottonseed oilor a synthetic fatty vehicle like ethyl oleate or the like may bedesired. Buffers, preservatives, antioxidants and the like can beincorporated according to accepted pharmaceutical practice.

Suitable examples of sustained-release preparations includesemipermeable matrices of solid hydrophobic polymers containing thepolypeptide, which matrices are in the form of shaped articles, e.g.,films, or microcapsules. Examples of sustained-release matrices includepolyesters, hydrogels [e.g., poly(2-hydroxyethyl-methacrylate) asdescribed by Langer et al., J. Biomed. Mater. Res., 15:167-277 [1981]and Langer, Chem. Tech., 12:98-105 [1982] or poly(vinylalcohol)],polylactides (U.S. Pat. No. 3,773,919, EP 58,481), copolymers ofL-glutamic acid and gamma ethyl-L-glutamate (Sidman et al., Biopolymers,22:547-556 [1983]), non-degradable ethylene-vinyl acetate (Langer etal., supra), degradable lactic acid-glycolic acid copolymers such as theLupron Depot™ (injectable microspheres composed of lactic acid-glycolicacid copolymer and leuprolide acetate), and poly-D-(−)-3-hydroxybutyricacid (EP 133,988).

While polymers such as ethylene-vinyl acetate and lactic acid-glycolicacid enable release of molecules for over 100 days, certain hydrogelsrelease proteins for shorter time periods. When encapsulated proteinsremain in the body for a long time, they may denature or aggregate as aresult of exposure to moisture at 37′C, resulting in a loss ofbiological activity and possible changes in immunogenicity. Rationalstrategies can be devised for protein stabilization depending on themechanism involved. For example, if the aggregation mechanism isdiscovered to be intermolecular S—S bond formation throughthio-disulfide interchange, stabilization may be achieved by modifyingsulfhydryl residues, lyophilizing from acidic solutions, controllingmoisture content, using appropriate additives, and developing specificpolymer matrix compositions.

Sustained-release megakaryocytopoietic protein compositions also includeliposomally entrapped megakaryocytopoietic protein. Liposomes containingmegakaryocytopoietic protein are prepared by methods known per se: DE3,218,121; Epstein et al., Proc. Natl. Acad. Sci. USA, 82:3688-3692(1985); Hwang et al., Proc. Natl. Acad. Sci. USA, 77:4030-4034 (1980);EP 52,322; EP 36,676; EP 88,046; EP 143,949; EP 142,641; Japanese patentapplication 83-118008; U.S. Pat. Nos. 4,485,045 and 4,544,545; and EP102,324. Ordinarily the liposomes are of the small (about 200-800Angstroms) unilamellar type in which the lipid content is greater thanabout 30 mol. % cholesterol, the selected proportion being adjusted forthe optimal megakaryocytopoietic protein therapy.

The dosage will be determined by the attending physician taking intoconsideration various factors known to modify the action of drugsincluding severity and type of disease, body weight, sex, diet, time androute of administration, other medications and other relevant clinicalfactors. Typically, the daily regimen will range from 1-3000 μg/kg bodyweight. Preferably the dosage will range from 1-1000 μg/kg body weight.Most preferably, the dosage will range from 1 to 150 μg/kg/day.Optionally, the dosage range will be the same as that of otherinterlukins, especially EPO. Therapeutically effective dosages may bedetermined by either in vitro or in vivo methods.

EXAMPLES

Without further description, it is believed that one of ordinary skillin the art can, using the preceding description and illustrativeexamples, make and utilize the present invention to the fullest extent.The following working examples therefore specifically point outpreferred embodiments of the present invention, and are not to beconstrued as limiting in any way of the remainder of the disclosure.

Example I Partial Purification of the Porcine MPL-Ligand

Aplastic porcine plasma obtained from irradiated pigs is made 4M withNaCl and stirred for 30 min. at room temperature. The resultantprecipitate is removed by centrifugation at 3800 rpm in a Sorvall RC3Band the supernatant is loaded onto a Phenyl-Toyopearl columnequilibrated in 10 mM NaPO₄ containing 4M NaCl. The column is washedwith this buffer until A₂₈₀ is <0.05 and eluted with dH₂O. The elutedprotein peak is diluted with dH₂O to a conductivity of 15 mS and loadedonto a Blue-Sepharose column equilibrated in PBS. Subsequently, thecolumn is washed with 5 column volumes each of PBS and 10 mM NaPO₄ (pH7.4) containing 2M urea. Proteins are eluted from the column with 10 mMNaPO₄ (pH 7.4) containing 2M urea and 1M NaCl. The eluted protein peakis made 0.01% octyl glucoside(n-octyl β-D-glucopyranoside) and 1 mM eachwith EDTA and Pefabloc and loaded directly onto tandemly linked CD4-IgGand mpl-IgG Ultralink (Pierce) columns (see below). The CD4-IgG columnis removed after the sample is loaded and the mpl-IgG column is washedwith 10 column volumes each of PBS and PBS containing 2 M NaCl andeluted with 0.1M glycine-HCl pH 2.25. Fractions are collected into1/10th volume 1M Tris-HCl (pH 8.0).

Analysis of eluted fractions from the mpl-affinity column by SDS-PAGE(4-20%, Novex gel) run under reducing conditions, revealed the presenceof several proteins (FIG. 3). Proteins that silver stain with thestrongest intensity resolve with apparent Mr of 66,000, 55,000, 30,000,28,000 and 14,000. To determine which of these proteins stimulateproliferation of Ba/F3-mpl cell cultures these proteins were eluted fromthe gel as described in Example II below.

Ultralink Affinity Columns

10-20 mg of mpl-IgG or CD4-IgG in PBS are coupled to 0.5 grams ofUltralink resin (Pierce) as described by the manufacturer'sinstructions.

Construction and Expression of mpl-IgG

A chimeric molecule comprising the entire extracellular domain of humanmpl (amino acids 1-491) and the Fc region of a human IgG1 molecule wasexpressed in 293 cells. A cDNA fragment encoding amino acids 1-491 ofhuman mpl was obtained by PCR from a human platelet cDNA library andsequenced. A ClaI site was inserted at the 5′ end and a BstEII site atthe 3′ end. This fragment was cloned upstream of the IgG1 Fc codingregion in a Bluescript vector between the ClaI and the BstEII sitesafter partial digestion of the PCR product with BstEII because of 2other BstEII sites present in the DNA encoding the extracellular domainof mpl. The BstEII site introduced at the 3′ end of the mpl PCR productwas designed to have the Fc region in frame with the mpl extracellulardomain. The construct was subcloned into pRK5-tkneo vector between theClaI and XbaI sites and transfected into 293 human embryonic kidneycells by the calcium phosphate method. The cells were selected in 0.4mg/ml G418 and individual clones were isolated. mpl-IgG expression fromisolated clones was determined using a human Fc specific ELISA. The bestexpression clone had an expression level of 1-2 mg/ml of mpl-IgG.

Ba/F3 mpl P Expressing Cells and mpl-Ligand Assay

A cDNA corresponding to the entire coding region of human mpl P wascloned into pRK5-tkneo which was subsequently linearized with NOTI andtransfected into the IL-3 dependent cell line Ba/F3 by electroporation(1×10⁷ cells, 9605F, 250 Volts). Three days later selection was startedin the presence of 2 mg/ml of G418. The cells selected as pools orindividual clones were obtained by limiting dilution in 96 well plates.Selected cells were maintained in RPMI containing 15% FBS, 1 mg/ml G418,20 mM Glutamine, 10 mM HEPES and 100 μg/ml of Pen-Strep. Expression ofmpl P in selected clones was determined by FACS analysis using aanti-mpl P rabbit polyclonal antibody.

To determine the presence of mpl-ligand from various sources, the mpl PBa/F3 cells were starved of IL-3 overnight at a cell density of 5×10⁵cells/ml in a humidified incubator at 37 C in 5% CO₂ and air. FollowingIL-3 starvation the cells were plated out in 96 well culture dishes at adensity of 50,000 cells in 200 μl of media with or without dilutedsamples and cultured for 24 hrs in a cell culture incubator. 20 μl ofserum free RPMI media containing 1 μCi of ³H-thymidine was added to eachwell for the last 6-8 hrs. The cells were then harvested on 96 well GF/Cfilter plates and washed 5 times with water. The filters were counted inthe presence of 40 μl of scintillation fluid (microscint 20) in aPackard Top Count counter.

Example II Highly Purified Porcine mpl Ligand Gel Elution Protocol

Equal amounts of affinity purified mpl ligand (fraction 6 eluted fromthe mpl-IgG column) and 2× Laemmli sample buffer were mixed at roomtemperature without reducing agent and loaded onto a Novex 4-20%polyacrylamide gel as quickly as possible. The sample was not heated. Asa control, sample buffer without ligand was run in an adjacent lane. Thegel was run at 4-6° C. at 135 volts for approximately 2¼ hours. Therunning buffer was initially at room temperature. The gel was thenremoved from the gel box and the plate on one side of the gel removed.

A replica of the gel was made on nitrocellulose as follows: A piece ofnitrocellulose was wet with distilled water and carefully laid on top ofthe exposed gel face so air bubbles were excluded. Fiducial marks wereplaced on the nitrocellulose and the gel plate so the replica could beaccurately repositioned after staining. After approximately 2 minutes,the nitrocellulose was carefully removed, and the gel was wrapped inplastic wrap and placed in the refrigerator. The nitrocellulose wasstained with Biorad's gold total protein stain by first agitating it in3×10 mL 0.1% Tween 20+0.5 M NaCl+0.1 M Tris-HCl pH 7.5 overapproximately 45 minutes followed by 3×10 mL purified water over 5minutes. The gold stain was then added and allowed to develop until thebands in the standards were visible. The replica was then rinsed withwater, placed over the plastic wrap on the gel and carefully alignedwith the fiducial marks. The positions of the Novex standards weremarked on the gel plate and lines were drawn to indicate the cuttingpositions. The nitrocellulose and plastic wrap were then removed and thegel cut along the indicated lines with a sharp razor blade. The cutswere extended beyond the sample lanes so they could be used to determinethe positions of the slices when the gel was stained. After the sliceswere removed, the remaining gel was silver stained and the positions ofthe standards and the cut marks were measured. The molecular weightscorresponding to the cut positions were determined from the Novexstandards.

The 12 gel slices were placed into the cells in two Biorad model 422electro-eluters. 12-14K molecular weight cutoff membrane caps were usedin the cells. 50 mM ammonium bicarbonate+0.05% SDS (approximately pH7.8) was the elution buffer. 1 L of buffer was chilled approximately 1hour in a 4-6° C. coldroom before use. Gel slices were eluted at 10ma/cell (40 v initially) in a 4-6° C. coldroom. Elution tookapproximately 4 hours. The cells were then carefully removed and theliquid above the frit removed with a pipet. The elution chamber wasremoved and any liquid above the membrane cap removed with a pipet. Theliquid in the membrane cap was removed with a Pipetman and saved. 50 μLaliquots of purified water were then placed in the cap, agitated andremoved until all the SDS crystals dissolved. These washes were combinedwith the saved liquid above. Total elution sample volume was 300-500 μLper gel slice. Samples were placed in 10 mm Spectrapor 4 12-14K cutoffdialysis tubing which had been soaked several hours in purified water.They were dialyzed overnight at 4-6° C. against 600 mL of phosphatebuffered saline (PBS is approximately 4 mM in potassium) per 6 samples.The buffer was replaced the next morning and dialysis continued for 2.5hours. Samples were then removed from the dialysis bags and placed inmicrofuge tubes. The tubes were placed on ice for 1 hour, microfuged at14K rpm for 3 min. and the supernatants carefully removed from theprecipitated SDS. The supernatants were then placed on ice forapproximately 1 hour more and microfuged again for 4 min. Thesupernatants were diluted in phosphate buffered saline and submitted forthe activity assay. Remaining samples were frozen at −70° C.

Example III Porcine Mpl Ligand Microsequencing

Fraction 6 (2.6 ml) from the mpl-IgG affinity column was concentrated ona Microcon-10 (Amicon). In order to prevent the mpl ligand fromabsorbing to the Microcon, the membrane was rinsed with 1% SDS and 5 μlof 10% SDS was added to fraction 6. Sample buffer (20 μl) of 2× wasadded to the fraction #6 after Microcon concentration (20 μl) and thetotal volume (40 μl) was loaded on a single lane of a 4-20% gradientacrylamide gel (Novex). The gel was run following Novex protocol. Thegel was then equilibrated for 5 min. prior to electroblotting in 10 mM3-(cyclohexylamino)-1-propanesulfonic acid (CAPS) buffer, pH 11.0,containing 10% methanol. Electroblotting onto Immobilon-PSQ membranes(Millipore) was carried out for 45 min. at 250 mA constant current in aBioRad Trans-Blot transfer cell (32). The PVDF membrane was stained with0.1% Coomassie Blue R-250 in 40% methanol, 0.1% acetic acid for 1 min.and destained for 2-3 min. with 10% acetic acid in 50% methanol. Theonly proteins that were visible in the Mr 18,000-35,000 region of theblot had Mr of 30,000, 28,000 and 22,000.

Bands at 30, 28 and 22 KDa were subjected to protein sequencing.Automated protein sequencing was performed on a model 470A AppliedBiosystem sequencer equipped with an on-line PTH analyzer. The sequencerwas modified to inject 80-90% of the sample (Rodriguez, H. J.Chromatogr. 350:217-225 [1985]). Acetone (˜12 μl/L) was added to solventA to balance the UV absorbance. Electroblotted proteins were sequencedin the Blott cartridge. Peaks were integrated with Justice Innovationsoftware using Nelson Analytical 970 interfaces. Sequence interpretationwas performed on a VAX 5900 (Henzel, W. J., Rodriguez, H., and Watanabe,C. J. Chromatogr. 404:41-52 [1987]). N-terminal sequences (using oneletter code with uncertain residues in parenthesis) of indicated gelbands were:

1) 30 KDa (1.8 pmol) (SEQ ID NO: 10) 1    5      10   15    20        25(S)PAPPA(C)DPRLLNKLLRDD(H/S)VLH(G)RL 2) 28 KDa (0.5 pmol)(SEQ ID NO: 11)  1    5    10   15    20      25(S)PAPPAXDPRLLNKLLRDD(H)VL(H)GR 3) 22 KDa (0.5 pmol) (SEQ ID NO: 12)1   5    10 XPAPPAXDPRLX(N)(K) 

Example IV Liquid Suspension Megakaryocytopoiesis Assay

Human peripheral stem cells (PSC) (obtained from consenting patients)were diluted 5 fold with IMDM media (Gibco) and centrifuged for 15 min.at room temp. at 800×g. The cell pellets were resuspended in IMDM andlayered onto 60% Percoll (density 1.077 gm/ml) (Pharmacia) andcentrifuged at 800×g for 30 min. The light density mononuclear cellswere aspirated at the interface and washed 2× with IMDM and plated outat 1-2×10⁶ cells/ml in IMDM containing 30% FBS (1 ml final volume) in 24well tissue culture clusters (Costar). APP or mpl-ligand depleted APPwas added to 10% and cultures were grown for 12-14 days in a humidifiedincubator at 37° C. in 5% CO₂ and air. The cultures were also grown inthe presence of 10% APP with 0.5 μg of mpl-IgG added at days 0, 2 and 4.APP was depleted of mpl ligand by passing APP through a mpl-IgG affinitycolumn.

To quantitate megakaryocytopoiesis in these liquid suspension cultures,a modification of Solberg, L. A. et al. was used and employs aradiolabeled murine IgG monoclonal antibody (HP1-1D) to GPIIbIIIa(provided by Dr. Nichols, Mayo Clinic). 100 μg of HP1-1D wasradiolabeled with 1 mCi of Na¹²⁵I using enzymobeads (Biorad, RichmondCalif.) as described by the manufacturer's instructions. RadiolabeledHP1-1D was stored at −70° C. in PBS containing 0.01% octyl-glucoside.Typical specific activities were 1-2×10⁶ cpm/μg (>95% precipated by12.5% trichloroacetic acid).

Liquid suspension cultures were set up in triplicate for eachexperimental point. After 12-14 days in culture the 1 ml cultures weretransferred to 1.5 ml eppendorf tubes and centrifuged at 800×g for 10min. at room temp. and the resultant cell pellets were resuspended in100 μl of PBS containing 0.02% EDTA and 20% bovine calf serum. 10 ng of¹²⁵I-HP1-1D in 50 μl of assay buffer was added to the resuspendedcultures and incubated for 60 min. at room temperature (RT) withoccasional shaking. Subsequently, cells were collected by centrifugationat 800×g for 10 min at RT and washed 2× with assay buffer. The pelletswere counted for 1 min. in a gamma counter (Packard). Non-specificbinding was determined by adding 1 μg of unlabeled HP1-1D for 60 min.before the addition of labeled HP1-1D. Specific binding was determinedas the total ¹²⁵I-HP1-1D bound minus that bound in the presence ofexcess unlabeled HP1-1D.

Example V Oligonucleotide PCR Primers

Based on the amino-terminal amino acid sequence obtained from the 30kDa, 28 kDa and 22 kDa proteins, degenerate oligonucleotides weredesigned for use as polymerase chain reaction (PCR) primers. Two primerpools were synthesized, a positive sense 20 mer pool encoding amino acidresidues 2-8 (mpl.1) and an anti-sense 21-mer pool complimentary tosequences encoding amino acids 18-24 (mpl. 2).

(SEQ ID NO: 14) mpl.1 5′ CCN GCN CCN CCN GCN TGY GA 3′(2,048-fold degenerate) (SEQ ID NO: 15) mpl.2 5′NCC RTG NAR NAC RTG RTC RTC 3′ (2,048-fold degenerate)Porcine genomic DNA, isolated from porcine peripheral blood lymphocytes,was used as a template for PCR. The 50 μl reaction contained: 0.8 μg ofporcine genomic DNA in 10 mM Tris-HCl (pH 8.3), 50 mM KCl, 3 mM MgCl₂,100 ug/ml BSA, 400 μM dNTPs, 1 μM of each primer pool and 2.5 units ofTaq polymerase. Initial template denaturation was at 94° C. for 8 min.followed by 35 cycles of 45 seconds at 94° C., 1 min. at 55° C. and 1min. at 72° C. The final cycle was allowed to extend for 10 min. at 72°C. PCR products were separated by electrophoresis on a 12%polyacrylamide gel and visualized by staining with ethidium bromide. Ifthe amino-terminal amino acid sequence is encoded by a single exon thenthe correct PCR product is expected to be 69 bp. A DNA fragment of thissize was eluted from the gel and subcloned into pGEMT (Promega).Sequences of three clones are shown below:

(1) gemT3 5′CCAGCGCCGC CAGCCTGTGA CCCCCGACTC CTAAATAAAC TGCCTCGTGA(SEQ ID NO: 16) 3′GGTCGCGGCG GTCGGACACT GGGGGCTGAG GATTTATTTG ACGGAGCACTTGACCACGTT CAGCACGGC 69 ACTGGTGCAA GTCGTGCCG (2) gemT75′CCAGCACCTC CGGCATGTGA CCCCCGACTC CTAAATAAAC TGCTTCGTGA (SEQ ID NO: 17)3′GGTCGTGGAG GCCGTACACT GGGGGCTGAG GATTTATTTG ACGAAGCACTCGACCACGTC CATCACGGC 69 GCTGGTGCAG GTAGTGCCG (3) gemT9 P R L L N K L L R(SEQ ID NO: 18) 5′ CCAGCACCGCCGGCATGTGACCCCCGACTCCTAAATAAACTGCTTCGTGACG(SEQ ID NO: 19) 3′ GGTCGTGGCGGCCGTACACTGGGGGCTGAGGATTTATTTGACGAAGCACTGCATCATGTCTATCACGGT 3′ TAGTACAGATAGTGCCA 5′The position of the PCR primers is indicated by the underlined bases.These results verify the N-terminal sequence obtained for amino acids9-17 for the 30 KDa and 28 KDa and amino acids 9-14 for the 22 KDaproteins and indicated that this sequence is encoded by a single exon ofporcine DNA.

Example VI Human mpl Ligand Gene

Based on the results from Example V, a 45-mer deoxyoligonucleotide wasdesigned and synthesized to screen a genomic library. The 45-mer had thefollowing sequence:

5′ GCC-GTG-AAG-GAC-GTG-GTC-GTC-ACG-AAG-CAG-TTT-ATT-TAG-GAG-TCG 3′(SEQ ID NO: 13)

This oligonucleotide was ³²P-labeled with (γ³²P)-ATP and T4 kinase andused to screen a human genomic DNA library in λgem12 under lowstringency hybridization and wash conditions. Positive clones werepicked, plaque purified and analyzed by restriction mapping and southernblotting. Clone #4 was selected for additional analysis.

A 2.8 kb BamHI-XbaI fragment that hybridized to the 45-mer was subclonedinto pBluescript SK−. Partial DNA sequencing of this clone was preformedusing as primers oligonucleotides specific to the porcine mpl ligand DNAsequence. The sequence obtained confirmed that DNA encoding the humanhomolog of the porcine mpl ligand had been isolated. An EcoRIrestriction site was detected in the sequence allowing us to isolate a390 bp EcoRI-XbaI fragment from the 2.8 kb BamHI-XbaI and to subclone itin pBluescript SK−.

Both strands of this fragment were sequenced. The human DNA sequence anddeduced amino acid sequence are shown in FIG. 7. The predicted positionsof introns in the genomic sequence are also indicated by arrows, anddefine a putative exon (“exon 2”).

Examination of the predicted amino acid sequence confirms that a serineresidue is the first amino acid of the mature mpl ligand, as determinedfrom direct amino acid sequence analysis. Immediately upstream from thiscodon the predicted amino acid sequence is highly suggestive of a signalsequence involved in secretion of the mature mpl ligand. This signalsequence coding region is probably interrupted at nucleotide position 68by an intron.

In the 3′ direction the exon appears to terminate at nucleotide 196.This exon therefore encodes a sequence of 42 amino acids, 16 of whichare likely to be part of a signal sequence and 26 of which are part ofthe mature human mpl ligand.

Example VII The Full Length Human mpl Ligand cDNA

Based on the human “exon 2” sequence (Example VI) 2 non-degenerateoligonucleotides corresponding to the 3′ and 5′ ends of the exonsequence were synthesized.

(SEQ ID NO: 20) Forward primer: 5′ GCT AGC TCT AGA AAT TGC TCCTCG TGG TCA TGC TTC T 3′ (SEQ ID NO: 21) Reverse primer: 5′CAG TCT GCC GTG AAG GAC ATG G 3′

These 2 primers were used in PCR reactions employing as a template DNAfrom various human cDNA libraries or 1 ng of Quick Clone cDNA(Clonetech) from various tissues using the conditions described in theExample 5. The expected size of the correct PCR product was 140 bp.After analysis of the PCR products on a 12% polyacrylamide gel, a DNAfragment of the expected size was detected in cDNA libraries preparedfrom adult kidney, 293 fetal kidney cells and cDNA prepared from humanfetal liver (Clonetech cat. #7171-1).

A fetal liver cDNA library in lambda DR2 (Clonetech cat. # HL1151x) wasscreened with the same 45 mer oligonucleotide used to screen the humangenomic library. The oligonucleotide was labelled with (γ³²P)-ATP usingT4 polynucleotide kinase. The library was screened under low stringencyhybridization conditions. The filters were prehybridized for 2 h thenhybridized with the probe overnight at 42° C. in 20% formamide, 5×SSC,10×Denhardt's, 0.05M sodium phosphate (pH 6.5), 0.1% sodiumpyrophosphate, 50 μg/ml of sonicated salmon sperm DNA for 16 h. Filterswere then rinsed in 2×SSC and then washed once in 0.5×SSC, 0.1% SDS at42° C. Filters were exposed overnight to Kodak X-Ray film. Positiveclones were picked, plaque purified and the insert size was determinedby PCR using oligonucleotides flanking the BamHI-XbaI cloning in lambdaDR2 (Clontech cat. #6475-1). 5 μl of phage stock was used as a templatesource. Initial denaturation was for 7 min. at 94° C. followed by 30cycles of amplification (1 min at 94° C., 1 min at 52° C. and 1.5 min at72° C.). Final extention was for 15 min at 72° C. Clone # FL2b had a 1.8kb insert and was selected for further analysis.

The plasmid pDR2 (Clonetech, Lambda DR2 & pDR2 cloning and ExpressionSystem Library Protocol Handbook, p 42) contained within the lambda DR2phage arms, was rescued as described per manufacturer's instructions(Clonetech, Lambda DR2 & pDR2 cloning and Expression System LibraryProtocol Handbook, p 29-30). Restriction analysis of the plasmidpDR2-FL2b with BamHI and XbaI indicated the presence of an internalBamHI restriction site in the insert approximately at position 650.Digestion of the plasmid with BamHI-XbaI cut the insert in twofragments, one of 0.65 kb and one of 1.15 kb. DNA sequence wasdetermined with three different classes of template derived from theplasmid pDR2-FL2b. DNA sequencing of double-stranded plasmid DNA wascarried out with the ABI373 (Applied Biosystems, Foster City, Calif.)automated fluorescent DNA sequencer using standard protocols fordye-labeled dideoxy nucleoside triphosphate terminators(dye-terminators) and custom synthesized walking primers (Sanger et al.,Proc. Natl. Acad. Sci. USA 1977; 74:5463-5467; Smith et al., Nature1986; 321:674-679). Direct sequencing of polymerase chain reactionamplified fragments from the plasmid was done with the ABI373 sequencerusing custom primers and dye-terminator reactions. Single strandedtemplate was generated with the M13 Janus vector (DNASTAR, Inc.,Madison, Wis.) (Burland et al., Nucl. Acids Res. 1993; 21:3385-3390).BamHI-XbaI (1.15 kb) and BamHI (0.65 kb) fragments were isolated fromthe plasmid pDR2-FL2b, the ends filled in with T4 DNA polymerase in thepresence of deoxynucleotides, and then subcloned into the SmaI site ofM13 Janus. Sequencing was carried out with standard protocols fordye-labeled M13 Universal and Reverse primers, or walking primers anddye-terminators. Manual sequencing reactions were carried out on singlestrand M13 DNA using walking primers and standard dideoxy-terminatorchemistry (Sanger et al., Proc. Natl. Acad. Sci. USA 1977;74:5463-5467), ³³P-labeled alpha-dATP and Sequenase (United StatesBiochemical Corp., Cleveland, Ohio). DNA sequence assembly was carriedout with Sequencher V2.1b12 (Gene Codes Corporation, Ann Arbor, Mich.).The nucleotide and deduced sequences are provided in FIG. 8.

Transient Expression of mpl Ligand

In order to subclone the full length insert contained in pDR2-FL2b, theplasmid was digested with XbaI to completion, then partially digestedwith BamHI. A DNA fragment corresponding to the 1.8 kb insert was gelpurified and subcloned in pRK5 (pRK5-hmpl l) (see U.S. Pat. No.5,258,287 for construction of pRK5) under the control of thecytomegalovirus immediate early promoter. DNA from the constructpRK5-hmpl l was prepared by the PEG method and transfected in Humanembryonic kidney 293 cells maintained in Dulbecco's modified Eagle'smedium (DMEM) supplemented with F-12 nutrient mixture, 20 mM Hepes (pH7.4) and 10% fetal bovine serum. Cells were transfected by the calciumphosphate method as described (Gorman, C. (1985) in DNA Cloning: APractical Approach (Glover, D. M., ed) Vol. II, pp. 143-190, IRL Press,Washington, D.C.). 36 h after transfection, the supernatant of thetransfected cells was assayed for activity in the proliferation assay(see Example I). Supernatant of 293 cells transfected with pRK vectoronly gave no stimulation of the Ba/F3 or Ba/F3-mpl cells (FIG. 10).Supernatant of cells transfected with pRK5-hmpl l had no effect on theBa/F3 cells but dramatically stimulates the proliferation of Ba/F3-mplcells, indicating that this cDNA encodes a functionally active human mplligand.

Example VIII CMK Assay for Thrombopoietin (TPO) Induction of PlateletAntigen GPII_(b)III_(a) Expression

CMK cells are maintained in RMPI 1640 medium (Sigma) supplemented with10% fetal bovine serum and 10 mM glutamine. In preparation for theassay, the cells are harvested, washed and resuspended at 5×10⁵ cells/mlin serum-free GIF medium supplemented with 5 mg/L bovine insulin, 10mg/L apo-transferrin, 1× trace elements. In a 96-well flat-bottom plate,the TPO standard or experimental samples are added to each well atappropriate dilutions in 100 μl volumes. 100 μl of the CMK cellsuspension is added to each well and the plates are incubated at 37° C.,in a 5% CO₂ incubator for 48 hours. After incubation, the plates arespun at 1000 rpm at 4° C. for five minutes. Supernatants are discardedand 100 μl of the FITC-conjugated GPII_(b)III_(a) monoclonal 2D2antibody is added to each well. Following incubation at 4° C. for 1hour, plates are spun again at 1000 rpm for five minutes. Thesupernatants containing unbound antibody are discarded and 200 μl of0.1% BSA-PBS wash is added to each well. The 0.1% BSA-PBS wash step isrepeated three times. Cells are then analyzed on a FASCAN using standardone parameter analysis measuring relative fluorescence intensity.

Example IX DAMI Assay for Thrombopoietin (TPO) by Measuring EndomitoticActivity of DAMI Cells on 96-Well Microtiter Plates

DAMI cells are maintained in IMDM+10% horse serum (Gibco) supplementedwith 10 mM glutamine, 100 ng/ml Penicillin G, and 50 ug/ml streptomycin.In preparation for the assay, the cells are harvested, washed, andresuspended at 1×10⁶ cells/ml in IMDM+1% horse serum. In a 96-wellround-bottom plate, 100 ul of the TPO standard or experimental samplesis added to DAMI cell suspension. Cells are then incubated for 48 hoursat 37° C. in a 5% CO₂ incubator. After incubation, plates are spun in aSorvall 6000B centrifuge at 1000 rpm for five minutes at 4° C.Supernatants are discarded and 200 μl of PBS-0.1% BSA wash step isrepeated. Cells are fixed by the addition of 200 μl ice-cold 70%Ethanol-PBS and resuspended by aspiration. After incubation at 4° C. for15 minutes, the plates are spun at 2000 rpm for five minutes and 150 ulof 1 mg/ml RNAse containing 0.1 mg/ml propidium iodide and 0.05%Tween-20 is added to each well. Following a one hour incubation at 37°C. the changes in DNA content are measured by flow cytometry. Polyploidyis measured and quantitated as follows:

${{Normalized}{\mspace{11mu}\;}{Polyploid}\mspace{14mu}{Ratio}\mspace{14mu}({NPR})} = \frac{\left( {{\%\mspace{14mu}{Cells}\mspace{14mu}{in}} > {{G\; 2} + {{M/\%}{\mspace{11mu}\;}{Cells}\mspace{14mu}{in}}} < {{G\; 2} + M}} \right)\mspace{14mu}{with}\mspace{14mu}{TPO}}{\left( {{\%\mspace{14mu}{Cells}\mspace{14mu}{in}} > {{G\; 2} + {{M/\%}{\mspace{11mu}\;}{Cells}\mspace{14mu}{in}}} < {{G\; 2} + M}} \right)\mspace{14mu}{in}\mspace{20mu}{control}}$

Example X Thrombopoietin (TPO) In Vivo Assay Mouse Platelet ReboundAssay In Vivo Assay for ³⁵S Determination of Platelet Production

C57BL6 mice (obtained from Charles River) are injected intraperitoneally(IP) with 1 ml goat anti-mouse platelet serum (6 amps) on day 1 toproduce thrombocytopenia. On days 5 and 6, mice are given two IPinjections of the factor or PBS as the control. On day 7, thirty μCi ofNa₂ ³⁵SO₄ in 0.1 ml saline are injected intravenously and the percent³⁵S incorporation of the injected dose into circulating platelets ismeasured in blood samples obtained from treated and control mice.Platelet counts and leukocyte counts are made at the same time fromblood obtained from the retro-orbital sinus.

While the invention has necessarily been described in conjunction withpreferred embodiments and specific working examples, one of ordinaryskill, after reading the foregoing specification, will be able to effectvarious changes, substitutions of equivalents, and alterations to thesubject matter set forth herein, without departing from the spirit andscope thereof. Hence, the invention can be practiced in ways other thanthose specifically described herein. It is therefore intended that theprotection granted by Letters Patent hereon be limited only by theappended claims and equivalents thereof.

All references cited herein are hereby expressly incorporated byreference.

1. An antibody that is capable of binding an isolated substantiallyhomogeneous mpl ligand, the mpl ligand consisting of amino acid residues1 to X of FIG. 8 where X is selected from the group 153, 164, 191, 205,207, 217, 229, 245 and
 332. 2. A hybridoma cell line producing theantibody of claim 1.